Download MendeleyCrystal structure of human CK2a2 in a new crystal form at 1.89 angstrom resolution
Tsuyuguchi, M., Nakaniwa, T., Kinoshita, T.To be published.
5YWM
Crystal structure of CK2a2 form-1
- PDB DOI: https://doi.org/10.2210/pdb5YWM/pdb
- Classification: TRANSFERASE
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2017-11-29 Released: 2018-12-05
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.94 Å
- R-Value Free: 0.243
- R-Value Work: 0.191
- R-Value Observed: 0.195
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Casein kinase II subunit alpha' | A [auth X] | 339 | Homo sapiens | Mutation(s): 0 Gene Names: CSNK2A2, CK2A2 EC: 2.7.11.1 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P19784 (Homo sapiens) Explore P19784 Go to UniProtKB: P19784 | |||||
PHAROS: P19784 GTEx: ENSG00000070770 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P19784 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NIO Query on NIO | D [auth X] | NICOTINIC ACID C6 H5 N O2 PVNIIMVLHYAWGP-UHFFFAOYSA-N |  | ||
| SO4 Query on SO4 | B [auth X], C [auth X] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.94 Å
- R-Value Free: 0.243
- R-Value Work: 0.191
- R-Value Observed: 0.195
- Space Group: P 21 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 67.292 | α = 90 |
| b = 101.023 | β = 90 |
| c = 45.764 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| XDS | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2018-12-05 Deposition Author(s): Tsuyuguchi, M., Kinoshita, T.
Revision History (Full details and data files)
- Version 1.0: 2018-12-05
Type: Initial release - Version 1.1: 2023-11-22
Changes: Data collection, Database references, Refinement description
