5VPP

The 70S P-site tRNA SufA6 complex

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.90 Å

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history. 


Literature

Mechanism of tRNA-mediated +1 ribosomal frameshifting.

Hong, S., Sunita, S., Maehigashi, T., Hoffer, E.D., Dunkle, J.A., Dunham, C.M.

(2018) Proc Natl Acad Sci U S A 115: 11226-11231

  • DOI: https://doi.org/10.1073/pnas.1809319115
  • Primary Citation of Related Structures:  
    5VPO, 5VPP

  • PubMed Abstract: 

    Accurate translation of the genetic code is critical to ensure expression of proteins with correct amino acid sequences. Certain tRNAs can cause a shift out of frame (i.e., frameshifting) due to imbalances in tRNA concentrations, lack of tRNA modifications or insertions or deletions in tRNAs (called frameshift suppressors). Here, we determined the structural basis for how frameshift-suppressor tRNA SufA6 (a derivative of tRNA Pro ) reprograms the mRNA frame to translate a 4-nt codon when bound to the bacterial ribosome. After decoding at the aminoacyl (A) site, the crystal structure of the anticodon stem-loop of tRNA SufA6 bound in the peptidyl (P) site reveals ASL conformational changes that allow for recoding into the +1 mRNA frame. Furthermore, a crystal structure of full-length tRNA SufA6 programmed in the P site shows extensive conformational rearrangements of the 30S head and body domains similar to what is observed in a translocation intermediate state containing elongation factor G (EF-G). The 30S movement positions tRNA SufA6 toward the 30S exit (E) site disrupting key 16S rRNA-mRNA interactions that typically define the mRNA frame. In summary, this tRNA-induced 30S domain change in the absence of EF-G causes the ribosome to lose its grip on the mRNA and uncouples the canonical forward movement of the tRNAs during elongation.

    • Organizational Affiliation: 

    Department of Biochemistry, Emory University School of Medicine, Atlanta, GA 30322.


Macromolecules

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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L2C [auth RD],
GA [auth YD]		276Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L3D [auth RE],
HA [auth YE]		206Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L4E [auth RF],
IA [auth YF]		210Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L5F [auth RG],
JA [auth YG]		182Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L6G [auth RH],
KA [auth YH]		180Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L9H [auth RI],
LA [auth YI]		148Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L13I [auth RN],
MA [auth YN]		140Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L14J [auth RO],
NA [auth YO]		122Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L15K [auth RP],
OA [auth YP]		150Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L16L [auth RQ],
PA [auth YQ]		141Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L17M [auth RR],
QA [auth YR]		118Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L18N [auth RS],
RA [auth YS]		112Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L19O [auth RT],
SA [auth YT]		146Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L20P [auth RU],
TA [auth YU]		118Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L21Q [auth RV],
UA [auth YV]		101Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L22R [auth RW],
VA [auth YW]		113Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L23S [auth RX],
WA [auth YX]		96Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L24T [auth RY],
XA [auth YY]		110Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L25U [auth RZ],
YA [auth YZ]		206Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L27V [auth R0],
ZA [auth Y0]		85Thermus thermophilus HB8Mutation(s): 0 
UniProt
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Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L28AB [auth Y1],
W [auth R1]		98Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L29BB [auth Y2],
X [auth R2]		72Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L30CB [auth Y3],
Y [auth R3]		60Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L32DB [auth Y5],
Z [auth R5]		60Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 27
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L33AA [auth R6],
EB [auth Y6]		54Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L34BA [auth R7],
FB [auth Y7]		49Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 29
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L35CA [auth R8],
GB [auth Y8]		65Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L36DA [auth R9],
HB [auth Y9]		37Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 31
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S2BC [auth XB],
IB [auth QB]		256Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 32
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S3CC [auth XC],
JB [auth QC]		239Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 33
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S4DC [auth XD],
KB [auth QD]		209Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 34
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S5EC [auth XE],
LB [auth QE]		162Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 35
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S6FC [auth XF],
MB [auth QF]		101Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 36
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S7GC [auth XG],
NB [auth QG]		156Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 37
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S8HC [auth XH],
OB [auth QH]		138Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 38
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S9IC [auth XI],
PB [auth QI]		128Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 39
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S10JC [auth XJ],
QB [auth QJ]		105Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 40
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S11KC [auth XK],
RB [auth QK]		129Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 41
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S12LC [auth XL],
SB [auth QL]		132Thermus thermophilus HB8Mutation(s): 0 
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Entity ID: 42
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S13MC [auth XM],
TB [auth QM]		126Thermus thermophilus HB8Mutation(s): 0 
UniProt
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Entity ID: 43
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S14 type ZNC [auth XN],
UB [auth QN]		61Thermus thermophilus HB8Mutation(s): 0 
UniProt
Find proteins for P0DOY6 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
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UniProt GroupP0DOY6
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Entity ID: 44
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S15OC [auth XO],
VB [auth QO]		89Thermus thermophilus HB8Mutation(s): 0 
UniProt
Find proteins for Q5SJ76 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
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Entity ID: 45
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S16PC [auth XP],
WB [auth QP]		88Thermus thermophilus HB8Mutation(s): 0 
UniProt
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Entity ID: 46
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S17QC [auth XQ],
XB [auth QQ]		105Thermus thermophilus HB8Mutation(s): 0 
UniProt
Find proteins for P0DOY7 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
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Entity ID: 47
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S18RC [auth XR],
YB [auth QR]		88Thermus thermophilus HB8Mutation(s): 0 
UniProt
Find proteins for Q5SLQ0 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
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Entity ID: 48
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S20SC [auth XT],
ZB [auth QT]		106Thermus thermophilus HB8Mutation(s): 0 
UniProt
Find proteins for P80380 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
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Entity ID: 50
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S19UC [auth XS],
WC [auth QS]		93Thermus thermophilus HB8Mutation(s): 0 
UniProt
Find proteins for Q5SHP2 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
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Entity ID: 51
MoleculeChains Sequence LengthOrganismDetailsImage
50S ribosomal protein L31VC [auth R4],
XC [auth Y4]		71Thermus thermophilus HB8Mutation(s): 0 
UniProt
Find proteins for Q5SJE1 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8))
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Entity ID: 1
MoleculeChains LengthOrganismImage
23S rRNAA [auth RA],
EA [auth YA]		2,915Thermus thermophilus HB8
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Entity ID: 2
MoleculeChains LengthOrganismImage
5S rRNAB [auth RB],
FA [auth YB]		122Thermus thermophilus HB8
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Entity ID: 49
MoleculeChains LengthOrganismImage
16S rRNAAC [auth QA],
TC [auth XA]		1,521Thermus thermophilus HB8
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Entity ID: 52
MoleculeChains LengthOrganismImage
messenger RNAAD [auth QX],
YC [auth XX]		19synthetic construct
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Entity ID: 53
MoleculeChains LengthOrganismImage
P-site tRNA SufA6BD [auth QV],
ZC [auth XV]		78Escherichia coli
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Small Molecules
Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN
Download Ideal Coordinates CCD File 
BRA [auth QD],
OWA [auth XD],
VQA [auth Y9],
XQA [auth QD]		ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
MG
Query on MG
Download Ideal Coordinates CCD File 
AAA [auth RF]
AAB [auth XA]
ABA [auth R8]
ABB [auth XA]
ACA [auth YA]
AAA [auth RF],
AAB [auth XA],
ABA [auth R8],
ABB [auth XA],
ACA [auth YA],
ADA [auth YA],
AE [auth RA],
AEA [auth YA],
AF [auth RA],
AFA [auth YA],
AG [auth RA],
AGA [auth YA],
AH [auth RA],
AHA [auth YA],
AI [auth RA],
AIA [auth YA],
AJ [auth RA],
AJA [auth YA],
AK [auth RA],
AKA [auth YA],
AL [auth RA],
ALA [auth YA],
AM [auth RA],
AMA [auth YA],
AN [auth RA],
ANA [auth YA],
AO [auth RA],
AOA [auth YA],
AP [auth RA],
APA [auth YA],
AQ [auth RA],
AQA [auth YD],
AR [auth RA],
ARA [auth QD],
AS [auth RA],
ASA [auth QA],
AT [auth RA],
ATA [auth QA],
AU [auth RA],
AUA [auth QA],
AV [auth RA],
AVA [auth QA],
AW [auth RA],
AWA [auth QA],
AX [auth RA],
AXA [auth XA],
AY [auth RA],
AYA [auth XA],
AZ [auth RB],
AZA [auth XA],
BAA [auth RF],
BAB [auth XA],
BBA [auth YA],
BBB [auth XA],
BCA [auth YA],
BDA [auth YA],
BE [auth RA],
BEA [auth YA],
BF [auth RA],
BFA [auth YA],
BG [auth RA],
BGA [auth YA],
BH [auth RA],
BHA [auth YA],
BI [auth RA],
BIA [auth YA],
BJ [auth RA],
BJA [auth YA],
BK [auth RA],
BKA [auth YA],
BL [auth RA],
BLA [auth YA],
BM [auth RA],
BMA [auth YA],
BN [auth RA],
BNA [auth YA],
BO [auth RA],
BOA [auth YA],
BP [auth RA],
BPA [auth YA],
BQ [auth RA],
BQA [auth YD],
BR [auth RA],
BS [auth RA],
BSA [auth QA],
BT [auth RA],
BTA [auth QA],
BU [auth RA],
BUA [auth QA],
BV [auth RA],
BVA [auth QA],
BW [auth RA],
BWA [auth QA],
BX [auth RA],
BXA [auth XA],
BY [auth RA],
BYA [auth XA],
BZ [auth RB],
BZA [auth XA],
CAA [auth RI],
CAB [auth XA],
CBA [auth YA],
CBB [auth XA],
CCA [auth YA],
CD [auth RA],
CDA [auth YA],
CE [auth RA],
CEA [auth YA],
CF [auth RA],
CFA [auth YA],
CG [auth RA],
CGA [auth YA],
CH [auth RA],
CHA [auth YA],
CI [auth RA],
CIA [auth YA],
CJ [auth RA],
CJA [auth YA],
CK [auth RA],
CKA [auth YA],
CL [auth RA],
CLA [auth YA],
CM [auth RA],
CMA [auth YA],
CN [auth RA],
CNA [auth YA],
CO [auth RA],
COA [auth YA],
CP [auth RA],
CPA [auth YA],
CQ [auth RA],
CQA [auth YD],
CR [auth RA],
CRA [auth QE],
CS [auth RA],
CSA [auth QA],
CT [auth RA],
CTA [auth QA],
CU [auth RA],
CUA [auth QA],
CV [auth RA],
CVA [auth QA],
CW [auth RA],
CWA [auth QA],
CX [auth RA],
CXA [auth XA],
CY [auth RA],
CYA [auth XA],
CZ [auth RB],
CZA [auth XA],
DAA [auth RO],
DAB [auth XA],
DBA [auth YA],
DBB [auth XA],
DCA [auth YA],
DD [auth RA],
DDA [auth YA],
DE [auth RA],
DEA [auth YA],
DF [auth RA],
DFA [auth YA],
DG [auth RA],
DGA [auth YA],
DH [auth RA],
DHA [auth YA],
DI [auth RA],
DIA [auth YA],
DJ [auth RA],
DJA [auth YA],
DK [auth RA],
DKA [auth YA],
DL [auth RA],
DLA [auth YA],
DM [auth RA],
DMA [auth YA],
DN [auth RA],
DNA [auth YA],
DO [auth RA],
DOA [auth YA],
DP [auth RA],
DPA [auth YA],
DQ [auth RA],
DQA [auth YD],
DR [auth RA],
DRA [auth QL],
DS [auth RA],
DSA [auth QA],
DT [auth RA],
DTA [auth QA],
DU [auth RA],
DUA [auth QA],
DV [auth RA],
DVA [auth QA],
DW [auth RA],
DWA [auth QA],
DX [auth RA],
DXA [auth XA],
DY [auth RA],
DYA [auth XA],
DZ [auth RB],
DZA [auth XA],
EAA [auth RO],
EAB [auth XA],
EBA [auth YA],
EBB [auth XA],
ECA [auth YA],
ED [auth RA],
EDA [auth YA],
EE [auth RA],
EEA [auth YA],
EF [auth RA],
EFA [auth YA],
EG [auth RA],
EGA [auth YA],
EH [auth RA],
EHA [auth YA],
EI [auth RA],
EIA [auth YA],
EJ [auth RA],
EJA [auth YA],
EK [auth RA],
EKA [auth YA],
EL [auth RA],
ELA [auth YA],
EM [auth RA],
EMA [auth YA],
EN [auth RA],
ENA [auth YA],
EO [auth RA],
EOA [auth YA],
EP [auth RA],
EPA [auth YA],
EQ [auth RA],
EQA [auth YE],
ER [auth RA],
ERA [auth QL],
ES [auth RA],
ESA [auth QA],
ET [auth RA],
ETA [auth QA],
EU [auth RA],
EUA [auth QA],
EV [auth RA],
EVA [auth QA],
EW [auth RA],
EWA [auth QA],
EX [auth RA],
EXA [auth XA],
EY [auth RA],
EYA [auth XA],
EZ [auth RB],
EZA [auth XA],
FAA [auth RQ],
FAB [auth XA],
FBA [auth YA],
FBB [auth XA],
FCA [auth YA],
FD [auth RA],
FDA [auth YA],
FE [auth RA],
FEA [auth YA],
FF [auth RA],
FFA [auth YA],
FG [auth RA],
FGA [auth YA],
FH [auth RA],
FHA [auth YA],
FI [auth RA],
FIA [auth YA],
FJ [auth RA],
FJA [auth YA],
FK [auth RA],
FKA [auth YA],
FL [auth RA],
FLA [auth YA],
FM [auth RA],
FMA [auth YA],
FN [auth RA],
FNA [auth YA],
FO [auth RA],
FOA [auth YA],
FP [auth RA],
FPA [auth YA],
FQ [auth RA],
FQA [auth YE],
FR [auth RA],
FRA [auth QL],
FS [auth RA],
FSA [auth QA],
FT [auth RA],
FTA [auth QA],
FU [auth RA],
FUA [auth QA],
FV [auth RA],
FVA [auth QA],
FW [auth RA],
FWA [auth QA],
FX [auth RA],
FXA [auth XA],
FY [auth RA],
FYA [auth XA],
FZ [auth RB],
FZA [auth XA],
GAA [auth RQ],
GAB [auth XA],
GBA [auth YA],
GBB [auth XA],
GCA [auth YA],
GD [auth RA],
GDA [auth YA],
GE [auth RA],
GEA [auth YA],
GF [auth RA],
GFA [auth YA],
GG [auth RA],
GGA [auth YA],
GH [auth RA],
GHA [auth YA],
GI [auth RA],
GIA [auth YA],
GJ [auth RA],
GJA [auth YA],
GK [auth RA],
GKA [auth YA],
GL [auth RA],
GLA [auth YA],
GM [auth RA],
GMA [auth YA],
GN [auth RA],
GNA [auth YA],
GO [auth RA],
GOA [auth YA],
GP [auth RA],
GPA [auth YA],
GQ [auth RA],
GQA [auth YE],
GR [auth RA],
GRA [auth QP],
GS [auth RA],
GSA [auth QA],
GT [auth RA],
GTA [auth QA],
GU [auth RA],
GUA [auth QA],
GV [auth RA],
GVA [auth QA],
GW [auth RA],
GWA [auth QA],
GX [auth RA],
GXA [auth XA],
GY [auth RA],
GYA [auth XA],
GZ [auth RB],
GZA [auth XA],
HAA [auth RR],
HAB [auth XA],
HBA [auth YA],
HBB [auth XA],
HCA [auth YA],
HD [auth RA],
HDA [auth YA],
HE [auth RA],
HEA [auth YA],
HF [auth RA],
HFA [auth YA],
HG [auth RA],
HGA [auth YA],
HH [auth RA],
HHA [auth YA],
HI [auth RA],
HIA [auth YA],
HJ [auth RA],
HJA [auth YA],
HK [auth RA],
HKA [auth YA],
HL [auth RA],
HLA [auth YA],
HM [auth RA],
HMA [auth YA],
HN [auth RA],
HNA [auth YA],
HO [auth RA],
HOA [auth YA],
HP [auth RA],
HPA [auth YA],
HQ [auth RA],
HQA [auth YE],
HR [auth RA],
HRA [auth QP],
HS [auth RA],
HSA [auth QA],
HT [auth RA],
HTA [auth QA],
HU [auth RA],
HUA [auth QA],
HV [auth RA],
HVA [auth QA],
HW [auth RA],
HWA [auth QA],
HX [auth RA],
HXA [auth XA],
HY [auth RA],
HYA [auth XA],
HZ [auth RD],
HZA [auth XA],
IAA [auth RR],
IAB [auth XA],
IBA [auth YA],
IBB [auth XA],
ICA [auth YA],
ID [auth RA],
IDA [auth YA],
IE [auth RA],
IEA [auth YA],
IF [auth RA],
IFA [auth YA],
IG [auth RA],
IGA [auth YA],
IH [auth RA],
IHA [auth YA],
II [auth RA],
IIA [auth YA],
IJ [auth RA],
IJA [auth YA],
IK [auth RA],
IKA [auth YA],
IL [auth RA],
ILA [auth YA],
IM [auth RA],
IMA [auth YA],
IN [auth RA],
INA [auth YA],
IO [auth RA],
IOA [auth YA],
IP [auth RA],
IPA [auth YA],
IQ [auth RA],
IQA [auth YE],
IR [auth RA],
IRA [auth QQ],
IS [auth RA],
ISA [auth QA],
IT [auth RA],
ITA [auth QA],
IU [auth RA],
IUA [auth QA],
IV [auth RA],
IVA [auth QA],
IW [auth RA],
IWA [auth QA],
IX [auth RA],
IXA [auth XA],
IY [auth RA],
IYA [auth XA],
IZ [auth RD],
IZA [auth XA],
JAA [auth RR],
JAB [auth XA],
JBA [auth YA],
JBB [auth XA],
JCA [auth YA],
JD [auth RA],
JDA [auth YA],
JE [auth RA],
JEA [auth YA],
JF [auth RA],
JFA [auth YA],
JG [auth RA],
JGA [auth YA],
JH [auth RA],
JHA [auth YA],
JI [auth RA],
JIA [auth YA],
JJ [auth RA],
JJA [auth YA],
JK [auth RA],
JKA [auth YA],
JL [auth RA],
JLA [auth YA],
JM [auth RA],
JMA [auth YA],
JN [auth RA],
JNA [auth YA],
JO [auth RA],
JOA [auth YA],
JP [auth RA],
JPA [auth YA],
JQ [auth RA],
JQA [auth YI],
JR [auth RA],
JRA [auth QQ],
JS [auth RA],
JSA [auth QA],
JT [auth RA],
JTA [auth QA],
JU [auth RA],
JUA [auth QA],
JV [auth RA],
JVA [auth QA],
JW [auth RA],
JWA [auth QA],
JX [auth RA],
JXA [auth XA],
JY [auth RA],
JYA [auth XA],
JZ [auth RD],
JZA [auth XA],
KAA [auth RT],
KAB [auth XA],
KBA [auth YA],
KBB [auth XA],
KCA [auth YA],
KD [auth RA],
KDA [auth YA],
KE [auth RA],
KEA [auth YA],
KF [auth RA],
KFA [auth YA],
KG [auth RA],
KGA [auth YA],
KH [auth RA],
KHA [auth YA],
KI [auth RA],
KIA [auth YA],
KJ [auth RA],
KJA [auth YA],
KK [auth RA],
KKA [auth YA],
KL [auth RA],
KLA [auth YA],
KM [auth RA],
KMA [auth YA],
KN [auth RA],
KNA [auth YA],
KO [auth RA],
KOA [auth YA],
KP [auth RA],
KPA [auth YA],
KQ [auth RA],
KQA [auth YP],
KR [auth RA],
KRA [auth QT],
KS [auth RA],
KSA [auth QA],
KT [auth RA],
KTA [auth QA],
KU [auth RA],
KUA [auth QA],
KV [auth RA],
KVA [auth QA],
KW [auth RA],
KWA [auth QA],
KX [auth RA],
KXA [auth XA],
KY [auth RA],
KYA [auth XA],
KZ [auth RD],
KZA [auth XA],
LAA [auth RT],
LAB [auth XA],
LBA [auth YA],
LBB [auth XA],
LCA [auth YA],
LD [auth RA],
LDA [auth YA],
LE [auth RA],
LEA [auth YA],
LF [auth RA],
LFA [auth YA],
LG [auth RA],
LGA [auth YA],
LH [auth RA],
LHA [auth YA],
LI [auth RA],
LIA [auth YA],
LJ [auth RA],
LJA [auth YA],
LK [auth RA],
LKA [auth YA],
LL [auth RA],
LLA [auth YA],
LM [auth RA],
LMA [auth YA],
LN [auth RA],
LNA [auth YA],
LO [auth RA],
LOA [auth YA],
LP [auth RA],
LPA [auth YA],
LQ [auth RA],
LQA [auth YQ],
LR [auth RA],
LRA [auth QT],
LS [auth RA],
LSA [auth QA],
LT [auth RA],
LTA [auth QA],
LU [auth RA],
LUA [auth QA],
LV [auth RA],
LVA [auth QA],
LW [auth RA],
LWA [auth QA],
LX [auth RA],
LXA [auth XA],
LY [auth RA],
LYA [auth XA],
LZ [auth RD],
LZA [auth XA],
MAA [auth RT],
MAB [auth XA],
MBA [auth YA],
MBB [auth XA],
MCA [auth YA],
MD [auth RA],
MDA [auth YA],
ME [auth RA],
MEA [auth YA],
MF [auth RA],
MFA [auth YA],
MG [auth RA],
MGA [auth YA],
MH [auth RA],
MHA [auth YA],
MI [auth RA],
MIA [auth YA],
MJ [auth RA],
MJA [auth YA],
MK [auth RA],
MKA [auth YA],
ML [auth RA],
MLA [auth YA],
MM [auth RA],
MMA [auth YA],
MN [auth RA],
MNA [auth YA],
MO [auth RA],
MOA [auth YA],
MP [auth RA],
MPA [auth YA],
MQ [auth RA],
MQA [auth YR],
MR [auth RA],
MRA [auth QA],
MS [auth RA],
MSA [auth QA],
MT [auth RA],
MTA [auth QA],
MU [auth RA],
MUA [auth QA],
MV [auth RA],
MVA [auth QA],
MW [auth RA],
MWA [auth QA],
MX [auth RA],
MXA [auth XA],
MY [auth RA],
MYA [auth XA],
MZ [auth RD],
MZA [auth XA],
NAA [auth RU],
NAB [auth XA],
NBA [auth YA],
NBB [auth XA],
NCA [auth YA],
ND [auth RA],
NDA [auth YA],
NE [auth RA],
NEA [auth YA],
NF [auth RA],
NFA [auth YA],
NG [auth RA],
NGA [auth YA],
NH [auth RA],
NHA [auth YA],
NI [auth RA],
NIA [auth YA],
NJ [auth RA],
NJA [auth YA],
NK [auth RA],
NKA [auth YA],
NL [auth RA],
NLA [auth YA],
NM [auth RA],
NMA [auth YA],
NN [auth RA],
NNA [auth YA],
NO [auth RA],
NOA [auth YA],
NP [auth RA],
NPA [auth YA],
NQ [auth RA],
NQA [auth YT],
NR [auth RA],
NRA [auth QA],
NS [auth RA],
NSA [auth QA],
NT [auth RA],
NTA [auth QA],
NU [auth RA],
NUA [auth QA],
NV [auth RA],
NVA [auth QA],
NW [auth RA],
NWA [auth XC],
NX [auth RA],
NXA [auth XA],
NY [auth RA],
NYA [auth XA],
NZ [auth RD],
NZA [auth XA],
OAA [auth RX],
OAB [auth XA],
OBA [auth YA],
OBB [auth XA],
OCA [auth YA],
OD [auth RA],
ODA [auth YA],
OE [auth RA],
OEA [auth YA],
OF [auth RA],
OFA [auth YA],
OG [auth RA],
OGA [auth YA],
OH [auth RA],
OHA [auth YA],
OI [auth RA],
OIA [auth YA],
OJ [auth RA],
OJA [auth YA],
OK [auth RA],
OKA [auth YA],
OL [auth RA],
OLA [auth YA],
OM [auth RA],
OMA [auth YA],
ON [auth RA],
ONA [auth YA],
OO [auth RA],
OOA [auth YA],
OP [auth RA],
OPA [auth YA],
OQ [auth RA],
OQA [auth YT],
OR [auth RA],
ORA [auth QA],
OS [auth RA],
OSA [auth QA],
OT [auth RA],
OTA [auth QA],
OU [auth RA],
OUA [auth QA],
OV [auth RA],
OVA [auth QA],
OW [auth RA],
OX [auth RA],
OXA [auth XA],
OY [auth RA],
OYA [auth XA],
OZ [auth RD],
OZA [auth XA],
PAA [auth RX],
PAB [auth XA],
PBA [auth YA],
PBB [auth XA],
PCA [auth YA],
PD [auth RA],
PDA [auth YA],
PE [auth RA],
PEA [auth YA],
PF [auth RA],
PFA [auth YA],
PG [auth RA],
PGA [auth YA],
PH [auth RA],
PHA [auth YA],
PI [auth RA],
PIA [auth YA],
PJ [auth RA],
PJA [auth YA],
PK [auth RA],
PKA [auth YA],
PL [auth RA],
PLA [auth YA],
PM [auth RA],
PMA [auth YA],
PN [auth RA],
PNA [auth YA],
PO [auth RA],
POA [auth YA],
PP [auth RA],
PPA [auth YA],
PQ [auth RA],
PQA [auth YU],
PR [auth RA],
PRA [auth QA],
PS [auth RA],
PSA [auth QA],
PT [auth RA],
PTA [auth QA],
PU [auth RA],
PUA [auth QA],
PV [auth RA],
PVA [auth QA],
PW [auth RA],
PWA [auth XD],
PX [auth RA],
PXA [auth XA],
PY [auth RA],
PYA [auth XA],
PZ [auth RD],
PZA [auth XA],
QAA [auth RY],
QAB [auth XA],
QBA [auth YA],
QBB [auth XA],
QCA [auth YA],
QD [auth RA],
QDA [auth YA],
QE [auth RA],
QEA [auth YA],
QF [auth RA],
QFA [auth YA],
QG [auth RA],
QGA [auth YA],
QH [auth RA],
QHA [auth YA],
QI [auth RA],
QIA [auth YA],
QJ [auth RA],
QJA [auth YA],
QK [auth RA],
QKA [auth YA],
QL [auth RA],
QLA [auth YA],
QM [auth RA],
QMA [auth YA],
QN [auth RA],
QNA [auth YA],
QO [auth RA],
QOA [auth YA],
QP [auth RA],
QPA [auth YB],
QQ [auth RA],
QQA [auth YX],
QR [auth RA],
QRA [auth QA],
QS [auth RA],
QSA [auth QA],
QT [auth RA],
QTA [auth QA],
QU [auth RA],
QUA [auth QA],
QV [auth RA],
QVA [auth QA],
QW [auth RA],
QWA [auth XE],
QX [auth RA],
QXA [auth XA],
QY [auth RA],
QYA [auth XA],
QZ [auth RD],
QZA [auth XA],
RAA [auth R0],
RAB [auth XA],
RBA [auth YA],
RBB [auth XA],
RCA [auth YA],
RD [auth RA],
RDA [auth YA],
RE [auth RA],
REA [auth YA],
RF [auth RA],
RFA [auth YA],
RG [auth RA],
RGA [auth YA],
RH [auth RA],
RHA [auth YA],
RI [auth RA],
RIA [auth YA],
RJ [auth RA],
RJA [auth YA],
RK [auth RA],
RKA [auth YA],
RL [auth RA],
RLA [auth YA],
RM [auth RA],
RMA [auth YA],
RN [auth RA],
RNA [auth YA],
RO [auth RA],
ROA [auth YA],
RP [auth RA],
RPA [auth YB],
RQ [auth RA],
RQA [auth YY],
RR [auth RA],
RRA [auth QA],
RS [auth RA],
RSA [auth QA],
RT [auth RA],
RTA [auth QA],
RU [auth RA],
RUA [auth QA],
RV [auth RA],
RVA [auth QA],
RW [auth RA],
RWA [auth XK],
RX [auth RA],
RXA [auth XA],
RY [auth RA],
RYA [auth XA],
RZ [auth RE],
RZA [auth XA],
SAA [auth R0],
SAB [auth XA],
SBA [auth YA],
SBB [auth XA],
SCA [auth YA],
SD [auth RA],
SDA [auth YA],
SE [auth RA],
SEA [auth YA],
SF [auth RA],
SFA [auth YA],
SG [auth RA],
SGA [auth YA],
SH [auth RA],
SHA [auth YA],
SI [auth RA],
SIA [auth YA],
SJ [auth RA],
SJA [auth YA],
SK [auth RA],
SKA [auth YA],
SL [auth RA],
SLA [auth YA],
SM [auth RA],
SMA [auth YA],
SN [auth RA],
SNA [auth YA],
SO [auth RA],
SOA [auth YA],
SP [auth RA],
SPA [auth YB],
SQ [auth RA],
SQA [auth Y0],
SR [auth RA],
SRA [auth QA],
SS [auth RA],
SSA [auth QA],
ST [auth RA],
STA [auth QA],
SU [auth RA],
SUA [auth QA],
SV [auth RA],
SVA [auth QA],
SW [auth RA],
SWA [auth XL],
SX [auth RA],
SXA [auth XA],
SY [auth RB],
SYA [auth XA],
SZ [auth RE],
SZA [auth XA],
TAA [auth R1],
TAB [auth XA],
TBA [auth YA],
TBB [auth XA],
TCA [auth YA],
TD [auth RA],
TDA [auth YA],
TE [auth RA],
TEA [auth YA],
TF [auth RA],
TFA [auth YA],
TG [auth RA],
TGA [auth YA],
TH [auth RA],
THA [auth YA],
TI [auth RA],
TIA [auth YA],
TJ [auth RA],
TJA [auth YA],
TK [auth RA],
TKA [auth YA],
TL [auth RA],
TLA [auth YA],
TM [auth RA],
TMA [auth YA],
TN [auth RA],
TNA [auth YA],
TO [auth RA],
TOA [auth YA],
TP [auth RA],
TPA [auth YB],
TQ [auth RA],
TQA [auth Y1],
TR [auth RA],
TRA [auth QA],
TS [auth RA],
TSA [auth QA],
TT [auth RA],
TTA [auth QA],
TU [auth RA],
TUA [auth QA],
TV [auth RA],
TVA [auth QA],
TW [auth RA],
TWA [auth XL],
TX [auth RA],
TXA [auth XA],
TY [auth RB],
TYA [auth XA],
TZ [auth RE],
TZA [auth XA],
UAA [auth R1],
UAB [auth XA],
UBA [auth YA],
UBB [auth XA],
UCA [auth YA],
UD [auth RA],
UDA [auth YA],
UE [auth RA],
UEA [auth YA],
UF [auth RA],
UFA [auth YA],
UG [auth RA],
UGA [auth YA],
UH [auth RA],
UHA [auth YA],
UI [auth RA],
UIA [auth YA],
UJ [auth RA],
UJA [auth YA],
UK [auth RA],
UKA [auth YA],
UL [auth RA],
ULA [auth YA],
UM [auth RA],
UMA [auth YA],
UN [auth RA],
UNA [auth YA],
UO [auth RA],
UOA [auth YA],
UP [auth RA],
UPA [auth YB],
UQ [auth RA],
UQA [auth Y8],
UR [auth RA],
URA [auth QA],
US [auth RA],
USA [auth QA],
UT [auth RA],
UTA [auth QA],
UU [auth RA],
UUA [auth QA],
UV [auth RA],
UVA [auth QA],
UW [auth RA],
UWA [auth XM],
UX [auth RA],
UXA [auth XA],
UY [auth RB],
UYA [auth XA],
UZ [auth RE],
UZA [auth XA],
VAA [auth R1],
VAB [auth XA],
VBA [auth YA],
VCA [auth YA],
VD [auth RA],
VDA [auth YA],
VE [auth RA],
VEA [auth YA],
VF [auth RA],
VFA [auth YA],
VG [auth RA],
VGA [auth YA],
VH [auth RA],
VHA [auth YA],
VI [auth RA],
VIA [auth YA],
VJ [auth RA],
VJA [auth YA],
VK [auth RA],
VKA [auth YA],
VL [auth RA],
VLA [auth YA],
VM [auth RA],
VMA [auth YA],
VN [auth RA],
VNA [auth YA],
VO [auth RA],
VOA [auth YA],
VP [auth RA],
VPA [auth YB],
VQ [auth RA],
VR [auth RA],
VRA [auth QA],
VS [auth RA],
VSA [auth QA],
VT [auth RA],
VTA [auth QA],
VU [auth RA],
VUA [auth QA],
VV [auth RA],
VVA [auth QA],
VW [auth RA],
VWA [auth XO],
VX [auth RA],
VXA [auth XA],
VY [auth RB],
VYA [auth XA],
VZ [auth RE],
VZA [auth XA],
WAA [auth R3],
WAB [auth XA],
WBA [auth YA],
WCA [auth YA],
WD [auth RA],
WDA [auth YA],
WE [auth RA],
WEA [auth YA],
WF [auth RA],
WFA [auth YA],
WG [auth RA],
WGA [auth YA],
WH [auth RA],
WHA [auth YA],
WI [auth RA],
WIA [auth YA],
WJ [auth RA],
WJA [auth YA],
WK [auth RA],
WKA [auth YA],
WL [auth RA],
WLA [auth YA],
WM [auth RA],
WMA [auth YA],
WN [auth RA],
WNA [auth YA],
WO [auth RA],
WOA [auth YA],
WP [auth RA],
WPA [auth YB],
WQ [auth RA],
WQA [auth QC],
WR [auth RA],
WRA [auth QA],
WS [auth RA],
WSA [auth QA],
WT [auth RA],
WTA [auth QA],
WU [auth RA],
WUA [auth QA],
WV [auth RA],
WVA [auth QA],
WW [auth RA],
WWA [auth XP],
WX [auth RA],
WXA [auth XA],
WY [auth RB],
WYA [auth XA],
WZ [auth RE],
WZA [auth XA],
XAA [auth R6],
XAB [auth XA],
XBA [auth YA],
XCA [auth YA],
XD [auth RA],
XDA [auth YA],
XE [auth RA],
XEA [auth YA],
XF [auth RA],
XFA [auth YA],
XG [auth RA],
XGA [auth YA],
XH [auth RA],
XHA [auth YA],
XI [auth RA],
XIA [auth YA],
XJ [auth RA],
XJA [auth YA],
XK [auth RA],
XKA [auth YA],
XL [auth RA],
XLA [auth YA],
XM [auth RA],
XMA [auth YA],
XN [auth RA],
XNA [auth YA],
XO [auth RA],
XOA [auth YA],
XP [auth RA],
XPA [auth YB],
XQ [auth RA],
XR [auth RA],
XRA [auth QA],
XS [auth RA],
XSA [auth QA],
XT [auth RA],
XTA [auth QA],
XU [auth RA],
XUA [auth QA],
XV [auth RA],
XVA [auth QA],
XW [auth RA],
XWA [auth XA],
XX [auth RA],
XXA [auth XA],
XY [auth RB],
XYA [auth XA],
XZ [auth RE],
XZA [auth XA],
YAA [auth R8],
YAB [auth XA],
YBA [auth YA],
YCA [auth YA],
YD [auth RA],
YDA [auth YA],
YE [auth RA],
YEA [auth YA],
YF [auth RA],
YFA [auth YA],
YG [auth RA],
YGA [auth YA],
YH [auth RA],
YHA [auth YA],
YI [auth RA],
YIA [auth YA],
YJ [auth RA],
YJA [auth YA],
YK [auth RA],
YKA [auth YA],
YL [auth RA],
YLA [auth YA],
YM [auth RA],
YMA [auth YA],
YN [auth RA],
YNA [auth YA],
YO [auth RA],
YOA [auth YA],
YP [auth RA],
YPA [auth YB],
YQ [auth RA],
YQA [auth QD],
YR [auth RA],
YRA [auth QA],
YS [auth RA],
YSA [auth QA],
YT [auth RA],
YTA [auth QA],
YU [auth RA],
YUA [auth QA],
YV [auth RA],
YVA [auth QA],
YW [auth RA],
YWA [auth XA],
YX [auth RA],
YXA [auth XA],
YY [auth RB],
YYA [auth XA],
YZ [auth RF],
YZA [auth XA],
ZAA [auth R8],
ZAB [auth XA],
ZBA [auth YA],
ZCA [auth YA],
ZD [auth RA],
ZDA [auth YA],
ZE [auth RA],
ZEA [auth YA],
ZF [auth RA],
ZFA [auth YA],
ZG [auth RA],
ZGA [auth YA],
ZH [auth RA],
ZHA [auth YA],
ZI [auth RA],
ZIA [auth YA],
ZJ [auth RA],
ZJA [auth YA],
ZK [auth RA],
ZKA [auth YA],
ZL [auth RA],
ZLA [auth YA],
ZM [auth RA],
ZMA [auth YA],
ZN [auth RA],
ZNA [auth YA],
ZO [auth RA],
ZOA [auth YA],
ZP [auth RA],
ZPA [auth YB],
ZQ [auth RA],
ZQA [auth QD],
ZR [auth RA],
ZRA [auth QA],
ZS [auth RA],
ZSA [auth QA],
ZT [auth RA],
ZTA [auth QA],
ZU [auth RA],
ZUA [auth QA],
ZV [auth RA],
ZVA [auth QA],
ZW [auth RA],
ZWA [auth XA],
ZX [auth RA],
ZXA [auth XA],
ZY [auth RB],
ZYA [auth XA],
ZZ [auth RF],
ZZA [auth XA]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.90 Å
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 210.75α = 90
b = 450.05β = 90
c = 626.64γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report



View more in-depth experimental data
Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2018-09-26
    Type: Initial release
  • Version 1.1: 2018-10-10
    Changes: Data collection, Database references, Structure summary
  • Version 1.2: 2018-11-07
    Changes: Data collection, Database references, Structure summary