5T1P

Crystal structure of the putative periplasmic solute-binding protein from Campylobacter jejuni

PDB DOI: https://doi.org/10.2210/pdb5T1P/pdb

Classification: HYDROLASE
Organism(s): Campylobacter jejuni BJ-CJGB96299
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2016-08-19 Released: 2016-09-07
Deposition Author(s): Filippova, E.V., Wawrzsak, Z., Sandoval, J., Skarina, T., Grimshaw, S., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.224
R-Value Work: 0.176
R-Value Observed: 0.178

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of the putative periplasmic solute-binding protein from Campylobacter jejuni

Filippova, E.V., Wawrzsak, Z., Sandoval, J., Skarina, T., Grimshaw, S., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published.

Macromolecule Content

Total Structure Weight: 311.61 kDa
Atom Count: 22,353
Modelled Residue Count: 2,612
Deposited Residue Count: 2,784
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ABC transporter, periplasmic substrate-binding protein	A, B, C, D, E A, B, C, D, E, F, G, H	348	Campylobacter jejuni BJ-CJGB96299	Mutation(s): 0 Gene Names: K680_1691
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
GPE Query on GPE Download Ideal Coordinates CCD File SDF format, chain J [auth A] SDF format, chain K [auth B] SDF format, chain L [auth C] SDF format, chain M [auth D] MOL2 format, chain J [auth A] MOL2 format, chain K [auth B] MOL2 format, chain L [auth C] MOL2 format, chain M [auth D]	J [auth A], K [auth B], L [auth C], M [auth D]	L-ALPHA-GLYCEROPHOSPHORYLETHANOLAMINE C₅ H₁₄ N O₆ P JZNWSCPGTDBMEW-RXMQYKEDSA-N		Interactions Focus chain J [auth A] Focus chain K [auth B] Focus chain L [auth C] Focus chain M [auth D] Interactions & Density Focus chain J [auth A] Focus chain K [auth B] Focus chain L [auth C] Focus chain M [auth D]
BTB Query on BTB Download Ideal Coordinates CCD File SDF format, chain N [auth E] SDF format, chain R [auth G] MOL2 format, chain N [auth E] MOL2 format, chain R [auth G]	N [auth E], R [auth G]	2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C₈ H₁₉ N O₅ OWMVSZAMULFTJU-UHFFFAOYSA-N		Interactions Focus chain N [auth E] Focus chain R [auth G] Interactions & Density Focus chain N [auth E] Focus chain R [auth G]
TRS Query on TRS Download Ideal Coordinates CCD File SDF format, chain P [auth F] SDF format, chain S [auth H] MOL2 format, chain P [auth F] MOL2 format, chain S [auth H]	P [auth F], S [auth H]	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C₄ H₁₂ N O₃ LENZDBCJOHFCAS-UHFFFAOYSA-O		Interactions Focus chain P [auth F] Focus chain S [auth H] Interactions & Density Focus chain P [auth F] Focus chain S [auth H]
PEG Query on PEG Download Ideal Coordinates CCD File SDF format, chain I [auth A] SDF format, chain O [auth E] SDF format, chain Q [auth F] SDF format, chain T [auth H] MOL2 format, chain I [auth A] MOL2 format, chain O [auth E] MOL2 format, chain Q [auth F] MOL2 format, chain T [auth H]	I [auth A], O [auth E], Q [auth F], T [auth H]	DI(HYDROXYETHYL)ETHER C₄ H₁₀ O₃ MTHSVFCYNBDYFN-UHFFFAOYSA-N		Interactions Focus chain I [auth A] Focus chain O [auth E] Focus chain Q [auth F] Focus chain T [auth H] Interactions & Density Focus chain I [auth A] Focus chain O [auth E] Focus chain Q [auth F] Focus chain T [auth H]