5LCZ

Chimeric GST

PDB DOI: https://doi.org/10.2210/pdb5LCZ/pdb

Classification: TRANSFERASE
Organism(s): Homo sapiens, Rattus norvegicus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2016-06-23 Released: 2016-09-21
Deposition Author(s): Axarli, A., Muleta, A.W., Chronopoulou, E.G., Papageorgiou, A.C., Labrou, N.E.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.33 Å
R-Value Free: 0.268
R-Value Work: 0.200
R-Value Observed: 0.204

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.3 of the entry. See complete history.

Literature

Directed evolution of glutathione transferases towards a selective glutathione-binding site and improved oxidative stability.

Axarli, I., Muleta, A.W., Chronopoulou, E.G., Papageorgiou, A.C., Labrou, N.E.

(2017) Biochim Biophys Acta 1861: 3416-3428

PubMed: 27612661 Search on PubMed
DOI: https://doi.org/10.1016/j.bbagen.2016.09.004
Primary Citation of Related Structures:
5LCZ, 5LD0

PubMed Abstract:
Glutathione transferases (GSTs) are a family of detoxification enzymes that catalyze the conjugation of glutathione (GSH) to electrophilic compounds.

Organizational Affiliation

Laboratory of Enzyme Technology, Department of Biotechnology, School of Food, Biotechnology and Development, Agricultural University of Athens, 75 Iera Odos Street, GR-11855 Athens, Greece.

Macromolecule Content

Total Structure Weight: 51.87 kDa
Atom Count: 3,412
Modelled Residue Count: 404
Deposited Residue Count: 444
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glutathione S-transferase A1,Glutathione S-transferase alpha-2,Glutathione S-transferase A1,Glutathione S-transferase alpha-2,Glutathione S-transferase A1	A, B	222	Homo sapiens, Rattus norvegicus	Mutation(s): 0 Gene Names: GSTA1, Gsta2 EC: 2.5.1.18
UniProt & NIH Common Fund Data Resources
Find proteins for P08263 (Homo sapiens) Explore P08263 Go to UniProtKB: P08263
PHAROS: P08263 GTEx: ENSG00000243955
Find proteins for P04903 (Rattus norvegicus) Explore P04903 Go to UniProtKB: P04903
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Groups	P08263P04903
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
GSH Query on GSH Download Ideal Coordinates CCD File SDF format, chain C [auth A] MOL2 format, chain C [auth A]	C [auth A]	GLUTATHIONE C₁₀ H₁₇ N₃ O₆ S RWSXRVCMGQZWBV-WDSKDSINSA-N		Interactions Focus chain C [auth A] Interactions & Density Focus chain C [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.33 Å
R-Value Free: 0.268
R-Value Work: 0.200
R-Value Observed: 0.204
Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 98.92	α = 90
b = 91.38	β = 93.18
c = 51.49	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XSCALE	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Ligand Structure Quality Assessment

Entry History

Deposition Data

Released Date: 2016-09-21

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2016-09-21
Type: Initial release
Version 1.1: 2016-12-21
Changes: Database references
Version 1.2: 2019-07-17
Changes: Data collection
Version 1.3: 2024-01-10
Changes: Data collection, Database references, Refinement description