4GBV
Crystal Structure of AMP complexes of Porcine Liver Fructose-1,6-bisphosphatase Mutant A54L with 1,2-ethanediol as Cryo-protectant
- PDB DOI: https://doi.org/10.2210/pdb4GBV/pdb
- Classification: HYDROLASE
- Organism(s): Sus scrofa
- Expression System: Escherichia coli
- Mutation(s): Yes 
- Deposited: 2012-07-28 Released: 2013-08-21 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.90 Å
- R-Value Free: 0.243 
- R-Value Work: 0.177 
- R-Value Observed: 0.180 
This is version 1.2 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Fructose-1,6-bisphosphatase 1 | 335 | Sus scrofa | Mutation(s): 1  Gene Names: FBP, FBP1 EC: 3.1.3.11 | ||
UniProt | |||||
Find proteins for P00636 (Sus scrofa) Explore P00636  Go to UniProtKB:  P00636 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P00636 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Ligands 4 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
AMP Query on AMP | F [auth A] | ADENOSINE MONOPHOSPHATE C10 H14 N5 O7 P UDMBCSSLTHHNCD-KQYNXXCUSA-N | |||
F6P Query on F6P | B [auth A] | 6-O-phosphono-beta-D-fructofuranose C6 H13 O9 P BGWGXPAPYGQALX-ARQDHWQXSA-N | |||
PO4 Query on PO4 | C [auth A] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K | |||
MN Query on MN | D [auth A], E [auth A] | MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.90 Å
- R-Value Free: 0.243 
- R-Value Work: 0.177 
- R-Value Observed: 0.180 
- Space Group: I 2 2 2
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 53.69 | α = 90 |
b = 82.506 | β = 90 |
c = 166.284 | γ = 90 |
Software Name | Purpose |
---|---|
d*TREK | data scaling |
d*TREK | data reduction |
MOLREP | phasing |
REFMAC | refinement |
PDB_EXTRACT | data extraction |
CrystalClear | data collection |
Entry History 
Deposition Data
- Released Date: 2013-08-21  Deposition Author(s): Honzatko, R.B., Gao, Y.
Revision History (Full details and data files)
- Version 1.0: 2013-08-21
Type: Initial release - Version 1.1: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Database references, Derived calculations, Structure summary - Version 1.2: 2024-02-28
Changes: Data collection, Database references, Structure summary