4D5V
Hypocrea jecorina cellobiohydrolase Cel7A E217Q soaked with xylotetraose.
- PDB DOI: https://doi.org/10.2210/pdb4D5V/pdb
- Classification: HYDROLASE
- Organism(s): Trichoderma reesei
- Expression System: Trichoderma reesei
- Mutation(s): Yes 
- Deposited: 2014-11-07 Released: 2015-03-25 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.62 Å
- R-Value Free: 0.179 
- R-Value Work: 0.147 
- R-Value Observed: 0.149 
This is version 3.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
CELLULOSE 1,4-BETA-CELLOBIOSIDASE | 434 | Trichoderma reesei | Mutation(s): 1  EC: 3.2.1.176 | ||
UniProt | |||||
Find proteins for P62694 (Hypocrea jecorina) Explore P62694  Go to UniProtKB:  P62694 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P62694 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Small Molecules
Ligands 2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | E [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
CO Query on CO | D [auth A] | COBALT (II) ION Co XLJKHNWPARRRJB-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Type | Formula | 2D Diagram | Parent |
PCA Query on PCA | A | L-PEPTIDE LINKING | C5 H7 N O3 | GLN |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.62 Å
- R-Value Free: 0.179 
- R-Value Work: 0.147 
- R-Value Observed: 0.149 
- Space Group: I 2 2 2
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 83.21 | α = 90 |
b = 83.36 | β = 90 |
c = 110.69 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
MOSFLM | data reduction |
SCALA | data scaling |
REFMAC | phasing |
Entry History 
Deposition Data
- Released Date: 2015-03-25  Deposition Author(s): Momeni, M.H., Stahlberg, J., Hansson, H.
Revision History (Full details and data files)
- Version 1.0: 2015-03-25
Type: Initial release - Version 1.1: 2015-06-17
Changes: Database references - Version 1.2: 2018-01-17
Changes: Data collection - Version 1.3: 2019-05-08
Changes: Data collection, Derived calculations, Experimental preparation - Version 2.0: 2020-03-11
Changes: Data collection, Other, Polymer sequence - Version 3.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Structure summary - Version 3.1: 2023-12-20
Changes: Data collection, Database references, Derived calculations, Refinement description, Structure summary