2HQL

Crystal structure of a small single-stranded DNA binding protein from Mycoplasma pneumoniae

PDB DOI: https://doi.org/10.2210/pdb2HQL/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Mycoplasmoides pneumoniae
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2006-07-18 Released: 2007-05-01
Deposition Author(s): Das, D., Berkeley Structural Genomics Center (BSGC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.272
R-Value Work: 0.210
R-Value Observed: 0.210

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of a novel single-stranded DNA binding protein from Mycoplasma pneumoniae.

Das, D., Hyun, H., Lou, Y., Yokota, H., Kim, R., Kim, S.H.

(2007) Proteins 67: 776-782

PubMed: 17348019 Search on PubMed
DOI: https://doi.org/10.1002/prot.21340
Primary Citation of Related Structures:
2HQL

Organizational Affiliation

Berkeley Structural Genomics Center, Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA.

Macromolecule Content

Total Structure Weight: 76.98 kDa
Atom Count: 5,184
Modelled Residue Count: 594
Deposited Residue Count: 660
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hypothetical protein MG376 homolog	A, B, C, D, E A, B, C, D, E, F	110	Mycoplasmoides pneumoniae	Mutation(s): 0 Gene Names: MPN554, MP288
UniProt
Find proteins for P75224 (Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1)) Explore P75224 Go to UniProtKB: P75224
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P75224
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.00 Å
R-Value Free: 0.272
R-Value Work: 0.210
R-Value Observed: 0.210
Space Group: P 3₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 103.134	α = 90
b = 103.134	β = 90
c = 63.86	γ = 120

Software Package:

Software Name	Purpose
SOLVE	phasing
CNS	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2007-05-01

Deposition Author(s):

Berkeley Structural Genomics Center (BSGC)

Revision History (Full details and data files)

Version 1.0: 2007-05-01
Type: Initial release
Version 1.1: 2008-05-01
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2024-02-14
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.