2G9D

Crystal Structure of Succinylglutamate desuccinylase from Vibrio cholerae, Northeast Structural Genomics Target VcR20

• PDB DOI: https://doi.org/10.2210/pdb2G9D/pdb

• Classification: HYDROLASE
• Organism(s): Vibrio cholerae MO10
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2006-03-06 Released: 2006-04-11 
• Deposition Author(s): Zhou, W., Jayaraman, S., Forouhar, F., Conover, K., Rong, X., Acton, T.B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.00 Å
• R-Value Free: 0.272 
• R-Value Work: 0.241 
• R-Value Observed: 0.241 

Literature

Crystal Structure of Succinylglutamate desuccinylase from Vibrio cholerae, Northeast Structural Genomics Target VcR20.

Zhou, W., Jayaraman, S., Forouhar, F., Conover, K., Rong, X., Acton, T.B., Montelione, G.T., Tong, L., Hunt, J.F.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 40.78 kDa 
• Atom Count: 2,752 
• Modelled Residue Count: 340 
• Deposited Residue Count: 350 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Succinylglutamate desuccinylase	A	350	Vibrio cholerae MO10	Mutation(s): 12  EC: 3.1
UniProt
Find proteins for Q9KSL4 (Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)) Explore Q9KSL4  Go to UniProtKB:  Q9KSL4

Small Molecules

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.00 Å
• R-Value Free: 0.272 
• R-Value Work: 0.241 
• R-Value Observed: 0.241 
• Space Group: P 6₅

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 82.934	α = 90
b = 82.934	β = 90
c = 116.665	γ = 120

Software Package:

Software Name	Purpose
CNS	refinement
DENZO	data reduction
SCALEPACK	data scaling
SHELX	phasing
SOLVE	phasing
RESOLVE	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2006-04-11 
Deposition Author(s): Zhou, W., Jayaraman, S., Forouhar, F., Conover, K., Rong, X., Acton, T.B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

Revision History  

• Version 1.0: 2006-04-11
  Type: Initial release
  
• Version 1.1: 2008-05-01
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Source and taxonomy, Version format compliance