1O4S

Crystal structure of Aspartate aminotransferase (TM1255) from Thermotoga maritima at 1.90 A resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.200 
  • R-Value Work: 0.159 
  • R-Value Observed: 0.160 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.6 of the entry. See complete history


Literature

Crystal structure of an aspartate aminotransferase (TM1255) from Thermotoga maritima at 1.90 A resolution

Schwarzenbacher, R.Jaroszewski, L.von Delft, F.Abdubek, P.Ambing, E.Biorac, T.Brinen, L.S.Canaves, J.M.Cambell, J.Chiu, H.J.Dai, X.Deacon, A.M.DiDonato, M.Elsliger, M.A.Eshagi, S.Floyd, R.Godzik, A.Grittini, C.Grzechnik, S.K.Hampton, E.Karlak, C.Klock, H.E.Koesema, E.Kovarik, J.S.Kreusch, A.Kuhn, P.Lesley, S.A.Levin, I.McMullan, D.McPhillips, T.M.Miller, M.D.Morse, A.Moy, K.Ouyang, J.Page, R.Quijano, K.Robb, A.Spraggon, G.Stevens, R.C.van den Bedem, H.Velasquez, J.Vincent, J.Wang, X.West, B.Wolf, G.Xu, Q.Hodgson, K.O.Wooley, J.Wilson, I.A.

(2004) Proteins 55: 759-763


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Aspartate aminotransferase
A, B
389Thermotoga maritimaMutation(s): 0 
Gene Names: TM1255
EC: 2.6.1.1
UniProt
Find proteins for Q9X0Y2 (Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8))
Explore Q9X0Y2 
Go to UniProtKB:  Q9X0Y2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9X0Y2
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
PLP
Query on PLP

Download Ideal Coordinates CCD File 
J [auth A],
M [auth B]
PYRIDOXAL-5'-PHOSPHATE
C8 H10 N O6 P
NGVDGCNFYWLIFO-UHFFFAOYSA-N
SO4
Query on SO4

Download Ideal Coordinates CCD File 
C [auth A]
D [auth A]
E [auth A]
F [auth A]
G [auth A]
C [auth A],
D [auth A],
E [auth A],
F [auth A],
G [auth A],
H [auth A],
I [auth A],
K [auth B],
L [auth B]
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Experimental Data & Validation

Experimental Data

Unit Cell:
Length ( Å )Angle ( ˚ )
a = 64.048α = 90
b = 79.509β = 90
c = 170.184γ = 90
Software Package:
Software NamePurpose
MOSFLMdata reduction
SCALAdata scaling
MOLREPphasing
REFMACrefinement
CCP4data scaling

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2003-07-08
    Type: Initial release
  • Version 1.1: 2008-04-26
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Advisory, Version format compliance
  • Version 1.3: 2017-10-04
    Changes: Refinement description
  • Version 1.4: 2018-07-18
    Changes: Data collection, Database references
  • Version 1.5: 2023-01-25
    Changes: Database references, Derived calculations
  • Version 1.6: 2023-09-20
    Changes: Data collection, Refinement description