Download MendeleyRefinement of Four Endothiapepsin Inhibitor Complexes. Crystallographic Studies of Cytochrome Ch from Methylobacterium Extorquens and Inhibitor Complexes of Aspartic Proteinases.
Read, J.A.(1999) Ph D Thesis
1E80
Endothiapepsin complex with renin inhibitor MERCK-KGAA-EMD56133
- PDB DOI: https://doi.org/10.2210/pdb1E80/pdb
- Classification: HYDROLASE/HYDROLASE INHIBITOR
- Organism(s): Cryphonectria parasitica
- Mutation(s): No
- Deposited: 2000-09-15 Released: 2000-09-26
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.05 Å
- R-Value Free: 0.221
- R-Value Work: 0.186
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| ENDOTHIAPEPSIN | A [auth E] | 330 | Cryphonectria parasitica | Mutation(s): 0 EC: 3.4.23.23 |  |
UniProt | |||||
Find proteins for P11838 (Cryphonectria parasitica) Explore P11838 Go to UniProtKB: P11838 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P11838 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 0GQ Query on 0GQ | B [auth E] | 4-amino-N-{(1R,8R,9R,13R)-16-(4-amino-2-methylpyrimidin-5-yl)-1-benzyl-8-(cyclohexylmethyl)-9-hydroxy-13-[(1S)-1-methylpropyl]-2,6,11,14-tetraoxo-3,7,12,15-tetraazahexadec-1-yl}piperidine-1-carboxamide C41 H64 N10 O6 HZSPXNCSLJOMIF-NQKKVWJDSA-N |  | ||
Biologically Interesting Molecules (External Reference) 1 Unique
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
| PRD_000296 (0GQ) Query on PRD_000296 | B [auth E] | MERCK-KGAA-EMD56133 | Peptide-like / Inhibitor | | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.05 Å
- R-Value Free: 0.221
- R-Value Work: 0.186
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 54.21 | α = 90 |
| b = 74.71 | β = 109.46 |
| c = 46.16 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| MOSFLM | data reduction |
| ROTAVATA | data scaling |
Entry History
Deposition Data
- Released Date: 2000-09-26 Deposition Author(s): Read, J.A., Cooper, J.B., Toldo, L., Rippmann, F., Raddatz, P.
Revision History (Full details and data files)
- Version 1.0: 2000-09-26
Type: Initial release - Version 1.1: 2011-07-13
Changes: Atomic model, Database references, Derived calculations, Non-polymer description, Structure summary, Version format compliance - Version 1.2: 2012-11-30
Changes: Other - Version 1.3: 2023-12-13
Changes: Data collection, Database references, Derived calculations, Refinement description
