PRD_000200

Nisin A

PRD_000200 is described in the Biologically Interesting Molecule Reference Dictionary (BIRD).

The representative PDB ID is 1WCO.

PRD_000200, as a polymer entry, exists in 1 entry. Examples include: 1WCO


Chemical Component Summary

NameNisin A
Identifiers[(5S)-5-[2-[[(2S)-2-[[(2S)-2-[[(2S,3S)-2-[[(2S)-2-[[(1R,4S,7R,11S,14S,17S)-17-[[(2S)-6-azaniumyl-2-[[(2S)-2-[[(2S)-2-[[(3R,9S,12S,15S,21S)-21-[[(2S)-6-azaniumyl-2-[[(3S,7R,13S)-3-[[(3R,6S,12S,15S)-15-[[(Z)-2-[[(2S,3S)-2-azanyl-3-methyl-pentanoyl]amino]but-2-enoyl]amino]-12-[(2S)-butan-2-yl]-9-methylidene-6-(2-methylpropyl)-5,8,11,14-tetrakis(oxidanylidene)-1-thia-4,7,10,13-tetrazacyclohexadec-3-yl]carbonylamino]-4-methyl-2,9,12-tris(oxidanylidene)-5-thia-1,8,11-triazabicyclo[11.3.0]hexadecan-7-yl]carbonylamino]hexanoyl]amino]-15,22-dimethyl-12-(2-methylpropyl)-9-(2-methylsulfanylethyl)-5,8,11,14,17,20-hexakis(oxidanylidene)-1-thia-4,7,10,13,16,19-hexazacyclodocos-3-yl]carbonylamino]-4-azanyl-4-oxidanylidene-butanoyl]amino]-4-methylsulfanyl-butanoyl]amino]hexanoyl]amino]-4-(2-azanyl-2-oxidanylidene-ethyl)-10,14,18-trimethyl-2,5,13,16,22-pentakis(oxidanylidene)-9,19-dithia-3,6,12,15,21-pentazabicyclo[9.9.2]docosan-7-yl]carbonylamino]-3-oxidanyl-propanoyl]amino]-3-methyl-pentanoyl]amino]-3-(1H-imidazol-3-ium-4-yl)propanoyl]amino]-3-methyl-butanoyl]amino]prop-2-enoylamino]-6-oxidanyl-6-oxidanylidene-hexyl]azanium
FormulaC141 H233 N41 O38 S7
Molecular Weight3,335.07
TypePolypeptide
Isomeric SMILESCC[C@H](C)[C@H](N)C(=O)N\C(=C\C)C(=O)N[C@@H]1CSC[C@H](NC(=O)[C@H](CC(C)C)NC(=O)C(=C)NC(=O)[C@@H](NC1=O)[C@@H](C)CC)C(=O)N[C@@H]2[C@@H](C)SC[C@H](NC(=O)CNC(=O)[C@@H]3CCCN3C2=O)C(=O)N[C@@H](CCCC[NH3+])C(=O)N[C@@H]4[C@@H](C)SC[C@H](NC(=O)CNC(=O)[C@H](CCSC)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](C)NC(=O)CNC4=O)C(=O)N[C@@H](CC(N)=O)C(=O)N[C@@H](CCSC)C(=O)N[C@@H](CCCC[NH3+])C(=O)N[C@@H]5[C@@H](C)SC[C@@H]6NC(=O)[C@H](NC(=O)[C@H](C)NC5=O)[C@@H](C)SC[C@H](NC(=O)[C@H](CC(N)=O)NC6=O)C(=O)N[C@@H](CO)C(=O)N[C@@H]([C@@H](C)CC)C(=O)N[C@@H](Cc7c[nH]c[nH+]7)C(=O)N[C@@H](C(C)C)C(=O)NC(=C)C(=O)N[C@@H](CCCC[NH3+])C(O)=O
InChIInChI=1S/C141H229N41O38S7/c1-24-67(11)103(147)133(211)159-79(27-4)116(194)171-91-57-223-58-92(172-121(199)86(48-65(7)8)166-113(191)72(16)155-136(214)105(68(12)25-2)177-130(91)208)131(209)181-110-77(21)227-60-93(157-102(188)55-150-132(210)97-38-34-44-182(97)140(110)218)126(204)161-81(36-29-32-42-143)118(196)179-107-74(18)224-59-94(158-101(187)54-149-115(193)82(39-45-221-22)162-120(198)85(47-64(5)6)165-111(189)70(14)153-100(186)53-151-134(107)212)127(205)167-88(50-98(145)184)122(200)163-83(40-46-222-23)117(195)160-80(35-28-31-41-142)119(197)180-108-75(19)226-62-96-128(206)168-89(51-99(146)185)123(201)173-95(61-225-76(20)109(139(217)174-96)178-114(192)73(17)156-138(108)216)129(207)170-90(56-183)125(203)176-106(69(13)26-3)137(215)169-87(49-78-52-148-63-152-78)124(202)175-104(66(9)10)135(213)154-71(15)112(190)164-84(141(219)220)37-30-33-43-144/h27,52,63-70,73-77,80-97,103-110,183H,15-16,24-26,28-51,53-62,142-144,147H2,1-14,17-23H3,(H2,145,184)(H2,146,185)(H,148,152)(H,149,193)(H,150,210)(H,151,212)(H,153,186)(H,154,213)(H,155,214)(H,156,216)(H,157,188)(H,158,187)(H,159,211)(H,160,195)(H,161,204)(H,162,198)(H,163,200)(H,164,190)(H,165,189)(H,166,191)(H,167,205)(H,168,206)(H,169,215)(H,170,207)(H,171,194)(H,172,199)(H,173,201)(H,174,217)(H,175,202)(H,176,203)(H,177,208)(H,178,192)(H,179,196)(H,180,197)(H,181,209)(H,219,220)/p+4/b79-27+/t67-,68-,69-,70-,73-,74+,75+,76+,77+,80-,81-,82-,83-,84-,85-,86-,87-,88-,89-,90-,91+,92-,93-,94-,95-,96-,97-,103-,104-,105-,106-,107+,108+,109+,110+/m0/s1
InChIKeyPWFSAVZKCGCNRK-BPOGWINFSA-R
CompositionPolymer Sequences: ILE,DBU,DAL,ILE,DHA,LEU,CYS,DBB,PRO,GLY,CYS,LYS,DBB,GLY,ALA,LEU,MET,GLY,CYS,ASN,MET,LYS,DBB,ALA,DBB,CYS,ASN,CYS,SER,ILE,HIS,VAL,DHA,LYS
Non-Polymer Components: n/a
BIRD classLANTIBIOTIC
Represented AsPOLYMER
Compound DetailsNISIN Z IS A LINEAR TYPE A LANTIBIOTIC, A CLASS OF ANTIBIOTICS CHARACTERIZED BY THIOETHER AMINO ACIDS LANTHIONINE AND/OR METHYLLANTHIONINE. HERE, NISIN Z IS REPRESENTED BY THE SEQUENCE (SEQRES)
DescriptionNisin Z is a heptacyclic peptide. Post Translational maturation of lantibiotics involves the enzymic conversion of Thr, and Ser into dehydrated AA and the formation of thioether bonds with cysteine. Thioether bonds with cysteine result in five cyclic structures along the peptide chain. This is followed by membrane translocation and cleavage of the modified precursor.

Chemical Details

Formal Charge0
Atom Count460
Chiral Atom Count31
Chiral AtomsC1, C103, C106, C11, C110, C113, C116, C118, C122, C128, C136, C14, C16, C23, C29, C3, C32, C36, C43, C46, C52, C58, C61, C67, C74, C77, C81, C86, C92, C96, C99
Bond Count466
Aromatic Bond Count5
Leaving AtomsO38, H2, H233