6ZON

SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
B [auth p]SCOP2B SuperfamilyRibosomal S3Ae-like8053212 3002166 SCOP2B (2022-06-29)
E [auth q]SCOP2B SuperfamilyNucleic acid-binding proteins8052756 3000135 SCOP2B (2022-06-29)
E [auth q]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8052757 3000334 SCOP2B (2022-06-29)
E [auth q]SCOP2B SuperfamilyAlpha-L RNA-binding motif8052755 3001473 SCOP2B (2022-06-29)
G [auth r]SCOP2B SuperfamilyGS N-terminal domain-like8053171 3000408 SCOP2B (2022-06-29)
I [auth t]SCOP2B Superfamily50S Ribosomal protein L14-like8053077 3000433 SCOP2B (2022-06-29)
K [auth n]SCOP2B SuperfamilyRibosomal S17 N-terminal domain-like8052715 3002138 SCOP2B (2022-06-29)
K [auth n]SCOP2B SuperfamilyNucleic acid-binding proteins8052717 3000135 SCOP2B (2022-06-29)
L [auth m]SCOP2B SuperfamilyS15/NS1 RNA-binding domain8052959 3001284 SCOP2B (2022-06-29)
L [auth m]SCOP2B SuperfamilyHomeodomain-like8052958 3000001 SCOP2B (2022-06-29)
M [auth i]SCOP2B SuperfamilyTranslational machinery components8098844 3000571 SCOP2B (2022-06-29)
N [auth y]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8053139 3000068 SCOP2B (2022-06-29)
O [auth f]SCOP2B SuperfamilyRibosomal protein S88095469 3000709 SCOP2B (2022-06-29)
S [auth T]SCOP2B SuperfamilyRibosomal protein S30e-like8053453 3002190 SCOP2B (2022-06-29)
V [auth g]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like8082685 3000100 SCOP2B (2022-06-29)
W [auth b]SCOP2B SuperfamilyProkaryotic type KH domain (KH-domain type II)8043545 3001043 SCOP2B (2022-06-29)
X [auth e]SCOP2B SuperfamilyRibosomal protein S78066003 3000799 SCOP2B (2022-06-29)
Y [auth u]SCOP2B SuperfamilyWinged helix DNA-binding domain8055714 3000034 SCOP2B (2022-06-29)
Z [auth v]SCOP2B SuperfamilyL30e-like8063978 3001739 SCOP2B (2022-06-29)
BA [auth k]SCOP2B SuperfamilyS13-like H2TH domain8101555 3000053 SCOP2B (2022-06-29)
DA [auth h]SCOP2B SuperfamilyRibosomal protein S108098806 3001336 SCOP2B (2022-06-29)
EA [auth P]SCOP2B SuperfamilyWinged helix DNA-binding domain8090992 3000034 SCOP2B (2022-06-29)
GA [auth l]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8052572 3000068 SCOP2B (2022-06-29)
KA [auth B]SCOP2B SuperfamilyRNA-binding domain RBD8073934 3000110 SCOP2B (2022-06-29)
MA [auth C]SCOP2B SuperfamilyWinged helix DNA-binding domain8093051 3000034 SCOP2B (2022-06-29)
MA [auth C]SCOP2B SuperfamilyTPR-like8093044 3001345 SCOP2B (2022-06-29)
NA [auth E]SCOP2B SuperfamilyWinged helix DNA-binding domain8091486 3000034 SCOP2B (2022-06-29)
NA [auth E]SCOP2B SuperfamilyTPR-like8091483 3001345 SCOP2B (2022-06-29)
OA [auth F]SCOP2B SuperfamilyJAB1/MPN domain-like8053242 3001105 SCOP2B (2022-06-29)
OA [auth F]SCOP2B SuperfamilyEIF3 subunit F C-terminal domain-like8053241 3002167 SCOP2B (2022-06-29)
A [auth a]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like8052791 3001397 SCOP2B (2022-06-29)
CA [auth x]SCOP2B SuperfamilyWinged helix DNA-binding domain8089318 3000034 SCOP2B (2022-06-29)
FA [auth S]SCOP2B SuperfamilyNucleic acid-binding proteins8063426 3000135 SCOP2B (2022-06-29)
D [auth Q]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8053143 3000068 SCOP2B (2022-06-29)
PA [auth H]SCOP2B SuperfamilyJAB1/MPN domain-like8053284 3001105 SCOP2B (2022-06-29)
QA [auth K]SCOP2B SuperfamilyWinged helix DNA-binding domain8002864 3000034 SCOP2B (2022-06-29)
QA [auth K]SCOP2B SuperfamilyARM repeat-like8002866 3000116 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
B [auth p]Ribosomal_S3Ae_Ne6zonp1 A: beta barrelsX: Ribosomal protein L25-likeH: 40S ribosomal protein S3A N-terminal domain (From Topology)T: 40S ribosomal protein S3A N-terminal domainF: Ribosomal_S3Ae_NECOD (1.6)
B [auth p]Ribosomal_S3Ae_Ce6zonp2 A: a+b two layersX: T-foldH: 40S ribosomal protein S3A C-terminal domain (From Topology)T: 40S ribosomal protein S3A C-terminal domainF: Ribosomal_S3Ae_CECOD (1.6)
C [auth d]Ribosomal_S5_C_1e6zond2 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S5_C_1ECOD (1.6)
C [auth d]Ribosomal_S5_3e6zond3 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: Ribosomal_S5_3ECOD (1.6)
C [auth d]Ribosomal_S5_2e6zond1 A: extended segmentsX: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)T: N-terminal region in 40S ribosomal protein rpS2 (S5p)F: Ribosomal_S5_2ECOD (1.6)
E [auth q]Ribosomal_S4ee6zonq3 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S4eECOD (1.6)
E [auth q]40S_S4_Ce6zonq1 A: beta barrelsX: SH3H: SH3T: SH3F: 40S_S4_CECOD (1.6)
E [auth q]RS4NTe6zonq2 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: RS4NTECOD (1.6)
F [auth W]Ribosomal_L41e6zonW1 A: extended segmentsX: Ribosomal protein L41-A (From Topology)H: Ribosomal protein L41-A (From Topology)T: Ribosomal protein L41-AF: Ribosomal_L41ECOD (1.6)
G [auth r]Ribosomal_S6ee6zonr1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: Ribosomal_S6eECOD (1.6)
H [auth s]Ribosomal_S7e_Ne6zons2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: Ribosomal_S7e_NECOD (1.6)
H [auth s]Ribosomal_S7e_C_1e6zons1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: Ribosomal_S7e_C_1ECOD (1.6)
I [auth t]Ribosomal_S8ee6zont1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_S8eECOD (1.6)
J [auth c]S4e6zonc1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: S4ECOD (1.6)
K [auth n]Ribosomal_S17_1e6zonn1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S17_1ECOD (1.6)
L [auth m]Ribosomal_S13_Ne6zonm2 A: alpha arraysX: HTHH: 40S ribosomal protein S13 N-terminal domain (From Topology)T: 40S ribosomal protein S13 N-terminal domainF: Ribosomal_S13_NECOD (1.6)
L [auth m]Ribosomal_S15_2e6zonm1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: Ribosomal_S15_2ECOD (1.6)
M [auth i]Ribosomal_S11e6zoni1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_S11ECOD (1.6)
N [auth y]Ribosomal_S21ee6zony1 A: a+b two layersX: 40S ribosomal protein rpS21 (S21e) (From Topology)H: 40S ribosomal protein rpS21 (S21e) (From Topology)T: 40S ribosomal protein rpS21 (S21e)F: Ribosomal_S21eECOD (1.6)
O [auth f]Ribosomal_S8_N_1e6zonf2 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: Ribosomal_S8_N_1ECOD (1.6)
O [auth f]Ribosomal_S8_C_1e6zonf1 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: Ribosomal_S8_C_1ECOD (1.6)
P [auth j]Ribosom_S12_S23e6zonj1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosom_S12_S23ECOD (1.6)
Q [auth z]Ribosomal_S24ee6zonz1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_S24eECOD (1.6)
S [auth T]Ribosomal_S30e6zonT1 A: extended segmentsX: 40S ribosomal protein S30 (S30e) (From Topology)H: 40S ribosomal protein S30 (S30e) (From Topology)T: 40S ribosomal protein S30 (S30e)F: Ribosomal_S30ECOD (1.6)
U [auth w]Ribosomal_S17ee6zonw1 A: alpha arraysX: HTHH: HTHT: FF domainF: Ribosomal_S17eECOD (1.6)
V [auth g]Ribosomal_S9e6zong1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S9ECOD (1.6)
W [auth b]Ribosomal_S3_Ce6zonb1 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: Ribosomal_S3_CECOD (1.6)
W [auth b]KH_2_3e6zonb2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: KH_2_3ECOD (1.6)
X [auth e]Ribosomal_S7_1e6zone1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: Ribosomal_S7_1ECOD (1.6)
Y [auth u]S10_plectine6zonu1 A: alpha arraysX: HTHH: HTHT: wingedF: S10_plectinECOD (1.6)
Z [auth v]Ribosomal_L7Aee6zonv1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7AeECOD (1.6)
AA [auth o]Ribosomal_S19e6zono1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: Ribosomal_S19ECOD (1.6)
BA [auth k]Ribosomal_S13e6zonk1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: Ribosomal_S13ECOD (1.6)
DA [auth h]Ribosomal_S10_1e6zonh1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: Ribosomal_S10_1ECOD (1.6)
EA [auth P]Ribosomal_S25e6zonP1 A: alpha arraysX: HTHH: HTHT: wingedF: Ribosomal_S25ECOD (1.6)
GA [auth l]Ribosomal_S14_2e6zonl1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S14_2ECOD (1.6)
IA [auth V]DUF1899e6zonV1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: DUF1899ECOD (1.6)
JA [auth I]ANAPC4_WD40_4e6zonI1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_4ECOD (1.6)
NA [auth E]PCIe6zonE1 A: alpha arraysX: HTHH: HTHT: wingedF: PCIECOD (1.6)
NA [auth E]eIF3_Ne6zonE3 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: eIF3_NECOD (1.6)
NA [auth E]KOG2758e6zonE2 A: extended segmentsX: 26S proteasome regulatory subunits C-terminal helicesH: 26S proteasome regulatory subunit RPN7 C-terminal helix (From Topology)T: 26S proteasome regulatory subunit RPN7 C-terminal helixF: KOG2758ECOD (1.6)
OA [auth F]JAB_1e6zonF2 A: a+b three layersX: Cytidine deaminase-like (From Topology)H: Cytidine deaminase-like (From Topology)T: Cytidine deaminase-likeF: JAB_1ECOD (1.6)
OA [auth F]MitMem_rege6zonF1 A: extended segmentsX: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology)H: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology)T: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domainF: MitMem_regECOD (1.6)
A [auth a]Ribosomal_S2_2e6zona1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: Ribosomal_S2_2ECOD (1.6)
RRibosomal_S27ee6zonR1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_S27eECOD (1.6)
CA [auth x]Ribosomal_S19ee6zonx1 A: alpha arraysX: HTHH: HTHT: wingedF: Ribosomal_S19eECOD (1.6)
FA [auth S]Ribosomal_S28ee6zonS1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S28eECOD (1.6)
HA [auth U]Ribosomal_S27e6zonU1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_S27ECOD (1.6)
D [auth Q]Ribosomal_S26ee6zonQ1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S26eECOD (1.6)
PA [auth H]JAB_1e6zonH2 A: a+b three layersX: Cytidine deaminase-like (From Topology)H: Cytidine deaminase-like (From Topology)T: Cytidine deaminase-likeF: JAB_1ECOD (1.6)
PA [auth H]KOG1560e6zonH1 A: extended segmentsX: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology)H: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology)T: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domainF: KOG1560ECOD (1.6)
QA [auth K]CSN8_PSD8_EIF3K_Ce6zonK1 A: alpha arraysX: HTHH: HTHT: wingedF: CSN8_PSD8_EIF3K_CECOD (1.6)
QA [auth K]SAC3_GANP_1ste6zonK2 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: SAC3_GANP_1stECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B [auth p]PF01015Ribosomal S3Ae family (Ribosomal_S3Ae)Ribosomal S3Ae family- Family
C [auth d]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
C [auth d]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
E [auth q]PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
E [auth q]PF1612140S ribosomal protein S4 C-terminus (40S_S4_C)40S ribosomal protein S4 C-terminus- Family
E [auth q]PF08071RS4NT (NUC023) domain (RS4NT)RS4NT (NUC023) domainThis is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1].Domain
E [auth q]PF00467KOW motif (KOW)KOW motif- Family
F [auth W]PF05162Ribosomal protein L41 (Ribosomal_L41)Ribosomal protein L41- Family
G [auth r]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
H [auth s]PF01251Ribosomal protein S7e (Ribosomal_S7e)Ribosomal protein S7e- Family
I [auth t]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
J [auth c]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
J [auth c]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
K [auth n]PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
K [auth n]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
L [auth m]PF08069Ribosomal S13/S15 N-terminal domain (Ribosomal_S13_N)Ribosomal S13/S15 N-terminal domainThis domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1].Domain
L [auth m]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
M [auth i]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
N [auth y]PF01249Ribosomal protein S21e (Ribosomal_S21e)Ribosomal protein S21e- Family
O [auth f]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
P [auth j]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
Q [auth z]PF01282Ribosomal protein S24e (Ribosomal_S24e)Ribosomal protein S24e- Family
S [auth T]PF04758Ribosomal protein S30 (Ribosomal_S30)Ribosomal protein S30- Family
U [auth w]PF00833Ribosomal S17 (Ribosomal_S17e)Ribosomal S17- Family
V [auth g]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
W [auth b]PF07650KH domain (KH_2)KH domain- Domain
W [auth b]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
X [auth e]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
Y [auth u]PF03501Plectin/S10 domain (S10_plectin)Plectin/S10 domainThis presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding.Domain
Z [auth v]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
AA [auth o]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
BA [auth k]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
DA [auth h]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
EA [auth P]PF03297S25 ribosomal protein (Ribosomal_S25)S25 ribosomal protein- Family
GA [auth l]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
IA [auth V]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
JA [auth I]PF12894Anaphase-promoting complex subunit 4 WD40 domain (ANAPC4_WD40)Anaphase-promoting complex subunit 4 WD40 domain- Repeat
JA [auth I]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
KA [auth B]PF08662Eukaryotic translation initiation factor eIF2A (eIF2A)Eukaryotic translation initiation factor eIF2A- Repeat
KA [auth B]PF00076RNA recognition motif (RRM_1)RNA recognition motifThe RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ...The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins (Swiss:P05455) have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins (Swiss:P05455) are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease.
Domain
LA [auth A]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1].Domain
MA [auth C]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1].Domain
NA [auth E]PF09440eIF3 subunit 6 N terminal domain (eIF3_N)eIF3 subunit 6 N terminal domainThis is the N terminal domain of subunit 6 translation initiation factor eIF3.Domain
NA [auth E]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1].Domain
NA [auth E]PF21357Eukaryotic translation initiation factor 3 subunit E, C-terminal (EIF3E_C)Eukaryotic translation initiation factor 3 subunit E, C-terminalEukaryotic translation initiation factor 3 subunit E (EIF3E) is a component of the EIF3 complex, involved in protein synthesis. This is the C-terminal helical tail of EIF3E [1].Domain
OA [auth F]PF13012Maintenance of mitochondrial structure and function (MitMem_reg)Maintenance of mitochondrial structure and function- Family
OA [auth F]PF01398JAB1/Mov34/MPN/PAD-1 ubiquitin protease (JAB)JAB1/Mov34/MPN/PAD-1 ubiquitin protease- Family
RA [auth L]PF10255RNA polymerase I-associated factor PAF67 (Paf67)RNA polymerase I-associated factor PAF67- Repeat
SA [auth M]PF18005eIF3 subunit M, C-terminal helix (eIF3m_C_helix)eIF3 subunit M, C-terminal helixThis is the C-terminal helix domain found in Eukaryotic translation initiation factor 3 subunit M (eIF3m). In mammalian eIF3a, the C-terminal helix following the PCI domain is involved in interactions with other core subunits [1].Domain
SA [auth M]PF01399PCI domain (PCI)PCI domainThis domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1].Domain
TA [auth D]PF05091Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) (eIF-3_zeta)Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)- Family
A [auth a]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
A [auth a]PF1612240S ribosomal protein SA C-terminus (40S_SA_C)40S ribosomal protein SA C-terminus- Family
PF01667Ribosomal protein S27 (Ribosomal_S27e)Ribosomal protein S27- Family
CA [auth x]PF01090Ribosomal protein S19e (Ribosomal_S19e)Ribosomal protein S19e- Family
FA [auth S]PF01200Ribosomal protein S28e (Ribosomal_S28e)Ribosomal protein S28e- Family
HA [auth U]PF01599Ribosomal protein S27a (Ribosomal_S27)Ribosomal protein S27aThis family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ...This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis [3]. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [2].
Domain
D [auth Q]PF01283Ribosomal protein S26e (Ribosomal_S26e)Ribosomal protein S26e- Family
PA [auth H]PF19445C-terminal region of eIF3h (eIF3h_C)C-terminal region of eIF3h- Family
PA [auth H]PF01398JAB1/Mov34/MPN/PAD-1 ubiquitin protease (JAB)JAB1/Mov34/MPN/PAD-1 ubiquitin protease- Family
QA [auth K]PF10075CSN8/PSMD8/EIF3K family (CSN8_PSD8_EIF3K)CSN8/PSMD8/EIF3K family- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B [auth p]40S ribosomal protein S3a
C [auth d]40S ribosomal protein S2
E [auth q]40S ribosomal protein S4, X isoform
F [auth W]60S ribosomal protein L41
G [auth r]40S ribosomal protein S6
H [auth s]40S ribosomal protein S7
I [auth t]40S ribosomal protein S8
J [auth c]40S ribosomal protein S9
K [auth n]40S ribosomal protein S11
L [auth m]40S ribosomal protein S13
M [auth i]40S ribosomal protein S14
N [auth y]40S ribosomal protein S21
O [auth f]40S ribosomal protein S15a
P [auth j]40S ribosomal protein S23
Q [auth z]40S ribosomal protein S24
S [auth T]40S ribosomal protein S30
T [auth 2]18S ribosomal RNA---
U [auth w]40S ribosomal protein S17
V [auth g]40S ribosomal protein S16
W [auth b]40S ribosomal protein S3
X [auth e]40S ribosomal protein S5
Y [auth u]40S ribosomal protein S10
Z [auth v]40S ribosomal protein S12
AA [auth o]40S ribosomal protein S15
BA [auth k]40S ribosomal protein S18
DA [auth h]40S ribosomal protein S20
EA [auth P]40S ribosomal protein S25
GA [auth l]40S ribosomal protein S29
IA [auth V]Receptor of activated protein C kinase 1
JA [auth I]Eukaryotic translation initiation factor 3 subunit I
KA [auth B]Eukaryotic translation initiation factor 3 subunit B
LA [auth A]Eukaryotic translation initiation factor 3 subunit A,Eukaryotic translation initiation factor 3 subunit A
MA [auth C]Eukaryotic translation initiation factor 3 subunit C
NA [auth E]Eukaryotic translation initiation factor 3 subunit E
OA [auth F]Eukaryotic translation initiation factor 3 subunit F
RA [auth L]Eukaryotic translation initiation factor 3 subunit L
SA [auth M]Eukaryotic translation initiation factor 3 subunit M
TA [auth D]Eukaryotic translation initiation factor 3 subunit D
UA [auth Y]Unknown factor---
VA [auth J]Host translation inhibitor Nsp1
A [auth a]40S ribosomal protein SA
40S ribosomal protein S27
CA [auth x]40S ribosomal protein S19
FA [auth S]40S ribosomal protein S28
HA [auth U]Ubiquitin-40S ribosomal protein S27a
D [auth Q]40S ribosomal protein S26
PA [auth H]Eukaryotic translation initiation factor 3 subunit H
QA [auth K]Eukaryotic translation initiation factor 3 subunit K

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B [auth p]IPR001593Small ribosomal subunit protein eS1Family
B [auth p]IPR018281Small ribosomal subunit protein eS1, conserved siteConserved Site
B [auth p]IPR027500Small ribosomal subunit protein eS1, eukaryotesFamily
C [auth d]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
C [auth d]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
C [auth d]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
C [auth d]IPR000851Small ribosomal subunit protein uS5Family
C [auth d]IPR005711Small ribosomal subunit protein uS5, eukaryotic/archaealFamily
C [auth d]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
C [auth d]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
E [auth q]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
E [auth q]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
E [auth q]IPR013845Small ribosomal subunit protein eS4, central regionDomain
E [auth q]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
E [auth q]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
E [auth q]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
E [auth q]IPR002942RNA-binding S4 domainDomain
E [auth q]IPR000876Small ribosomal subunit protein eS4Family
E [auth q]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
E [auth q]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
E [auth q]IPR005824KOWDomain
F [auth W]IPR007836Large ribosomal subunit protein eS32Family
G [auth r]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
G [auth r]IPR001377Small ribosomal subunit protein eS6Family
G [auth r]IPR014401Small ribosomal subunit protein eS6-likeFamily
H [auth s]IPR000554Small ribosomal subunit protein eS7Family
H [auth s]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
I [auth t]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotesHomologous Superfamily
I [auth t]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
I [auth t]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
I [auth t]IPR001047Small ribosomal subunit protein eS8Family
J [auth c]IPR002942RNA-binding S4 domainDomain
J [auth c]IPR022801Small ribosomal subunit protein uS4Family
J [auth c]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
J [auth c]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
J [auth c]IPR005710Small ribosomal subunit protein uS4, eukaryotic/archaealFamily
J [auth c]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
K [auth n]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
K [auth n]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
K [auth n]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
K [auth n]IPR000266Small ribosomal subunit protein uS17Family
K [auth n]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
L [auth m]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
L [auth m]IPR000589Small ribosomal subunit protein uS15Family
L [auth m]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotesFamily
L [auth m]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
M [auth i]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
M [auth i]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
M [auth i]IPR001971Small ribosomal subunit protein uS11Family
N [auth y]IPR038579Small ribosomal subunit protein eS21 superfamilyHomologous Superfamily
N [auth y]IPR018279Small ribosomal subunit protein eS21, conserved siteConserved Site
N [auth y]IPR001931Small ribosomal subunit protein eS21Family
O [auth f]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
O [auth f]IPR000630Small ribosomal subunit protein uS8Family
O [auth f]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
P [auth j]IPR006032Small ribosomal subunit protein uS12Family
P [auth j]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
P [auth j]IPR005680Small ribosomal subunit protein uS12, eukaryotic/archaealFamily
Q [auth z]IPR001976Small ribosomal subunit protein eS24Family
Q [auth z]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
Q [auth z]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
S [auth T]IPR019954Ubiquitin conserved siteConserved Site
S [auth T]IPR000626Ubiquitin-like domainDomain
S [auth T]IPR006846Small ribosomal subunit protein eS30Family
S [auth T]IPR039415Ubiquitin-like protein FUBIDomain
S [auth T]IPR019956Ubiquitin domainDomain
S [auth T]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
U [auth w]IPR001210Small ribosomal subunit protein eS17Family
U [auth w]IPR036401Small ribosomal subunit protein eS17 superfamilyHomologous Superfamily
U [auth w]IPR018273Small ribosomal subunit protein eS17, conserved siteConserved Site
V [auth g]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
V [auth g]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
V [auth g]IPR000754Small ribosomal subunit protein uS9Family
V [auth g]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
W [auth b]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
W [auth b]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
W [auth b]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
W [auth b]IPR004044K Homology domain, type 2Domain
W [auth b]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
W [auth b]IPR005703Small ribosomal subunit protein uS3, eukaryotic/archaealFamily
W [auth b]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
X [auth e]IPR023798Small ribosomal subunit protein uS7 domainDomain
X [auth e]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
X [auth e]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
X [auth e]IPR000235Small ribosomal subunit protein uS7Family
X [auth e]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
Y [auth u]IPR037447Small ribosomal subunit protein eS10Family
Y [auth u]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
Y [auth u]IPR005326Plectin/eS10, N-terminalDomain
Z [auth v]IPR000530Small ribosomal subunit protein eS12Family
Z [auth v]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
Z [auth v]IPR047860Small ribosomal subunit protein eS12, conserved siteConserved Site
Z [auth v]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
AA [auth o]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
AA [auth o]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
AA [auth o]IPR005713Small ribosomal subunit protein uS19, eukaryotic/archaealFamily
AA [auth o]IPR002222Small ribosomal subunit protein uS19Family
BA [auth k]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
BA [auth k]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
BA [auth k]IPR001892Small ribosomal subunit protein uS13Family
BA [auth k]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
DA [auth h]IPR027486Small ribosomal subunit protein uS10 domainDomain
DA [auth h]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
DA [auth h]IPR005729Small ribosomal subunit protein uS10, eukaryotic/archaealFamily
DA [auth h]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
DA [auth h]IPR001848Small ribosomal subunit protein uS10Family
EA [auth P]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
EA [auth P]IPR004977Small ribosomal subunit protein eS25Family
GA [auth l]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
GA [auth l]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
GA [auth l]IPR001209Small ribosomal subunit protein uS14Family
GA [auth l]IPR039744Small ribosomal subunit protein uS14, eukaryotes/archaeaFamily
IA [auth V]IPR019775WD40 repeat, conserved siteConserved Site
IA [auth V]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
IA [auth V]IPR045223Small ribosomal subunit protein RACK1-likeFamily
IA [auth V]IPR020472G-protein beta WD-40 repeatRepeat
IA [auth V]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
IA [auth V]IPR001680WD40 repeatRepeat
JA [auth I]IPR027525Eukaryotic translation initiation factor 3 subunit IFamily
JA [auth I]IPR024977Anaphase-promoting complex subunit 4-like, WD40 domainDomain
JA [auth I]IPR019775WD40 repeat, conserved siteConserved Site
JA [auth I]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
JA [auth I]IPR001680WD40 repeatRepeat
JA [auth I]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
KA [auth B]IPR013979Translation initiation factor, beta propellor-like domainDomain
KA [auth B]IPR034363eIF3B, RNA recognition motifDomain
KA [auth B]IPR000504RNA recognition motif domainDomain
KA [auth B]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
KA [auth B]IPR011400Eukaryotic translation initiation factor 3 subunit BFamily
KA [auth B]IPR035979RNA-binding domain superfamilyHomologous Superfamily
KA [auth B]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
LA [auth A]IPR027512Eukaryotic translation initiation factor 3 subunit AFamily
LA [auth A]IPR000717Proteasome component (PCI) domainDomain
MA [auth C]IPR008905Eukaryotic translation initiation factor 3 subunit C, N-terminal domainDomain
MA [auth C]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
MA [auth C]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
MA [auth C]IPR027516Eukaryotic translation initiation factor 3 subunit CFamily
MA [auth C]IPR000717Proteasome component (PCI) domainDomain
NA [auth E]IPR016650Eukaryotic translation initiation factor 3 subunit EFamily
NA [auth E]IPR019010Eukaryotic translation initiation factor 3 subunit E, N-terminalDomain
NA [auth E]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
NA [auth E]IPR000717Proteasome component (PCI) domainDomain
OA [auth F]IPR027531Eukaryotic translation initiation factor 3 subunit FFamily
OA [auth F]IPR024969EIF3F/CSN6-like, C-terminalDomain
OA [auth F]IPR037518MPN domainDomain
OA [auth F]IPR000555JAB1/MPN/MOV34 metalloenzyme domainDomain
RA [auth L]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
RA [auth L]IPR000717Proteasome component (PCI) domainDomain
RA [auth L]IPR019382Translation initiation factor 3 complex subunit LFamily
SA [auth M]IPR016024Armadillo-type foldHomologous Superfamily
SA [auth M]IPR040750eIF3 subunit M, C-terminal helix domainDomain
SA [auth M]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
SA [auth M]IPR027528Eukaryotic translation initiation factor 3 subunit MFamily
SA [auth M]IPR045237Eukaryotic translation initiation factor 3 subunit M eIF3m/COP9 signalosome complex subunit 7 COPS7Family
SA [auth M]IPR000717Proteasome component (PCI) domainDomain
TA [auth D]IPR007783Eukaryotic translation initiation factor 3 subunit DFamily
VA [auth J]IPR022733DPUP/SUD, C-terminal, betacoronavirusDomain
VA [auth J]IPR042515Non-structural protein NSP15, N-terminal domain superfamily, coronavirusHomologous Superfamily
VA [auth J]IPR043174Non-structural protein NSP15, middle domain superfamilyHomologous Superfamily
VA [auth J]IPR044315Nonstructural protein 14, betacoronavirusDomain
VA [auth J]IPR038123Non-structural protein NSP4, C-terminal superfamily, coronavirusHomologous Superfamily
VA [auth J]IPR042570Non-structural protein NSP3, nucleic acid-binding domain superfamily, betacoronavirusHomologous Superfamily
VA [auth J]IPR043178Papain-like protease, thumb domain superfamily, coronavirusHomologous Superfamily
VA [auth J]IPR046441RNA-dependent RNA polymerase, coronavirusDomain
VA [auth J]IPR044863Nidovirus RdRp-associated nucleotidyl transferase (NiRAN) domainDomain
VA [auth J]IPR044343Nonstructural protein 13, 1B domain, coronavirusDomain
VA [auth J]IPR038166Polyprotein cleavage domain PL2pro superfamily, betacoronavirusHomologous Superfamily
VA [auth J]IPR037227Endoribonuclease EndoU-likeHomologous Superfamily
VA [auth J]IPR027352Nonstructural protein 13, zinc-binding domain, coronavirus-likeDomain
VA [auth J]IPR009003Peptidase S1, PA clanHomologous Superfamily
VA [auth J]IPR013016Peptidase C16, coronavirusDomain
VA [auth J]IPR009466Non-structural protein 14, coronavirusDomain
VA [auth J]IPR044357NSP3, first ubiquitin-like (Ubl) domain, coronavirusDomain
VA [auth J]IPR046436Nidovirus 3'-5' exoribonuclease domainDomain
VA [auth J]IPR047570NSP12, interface domain, coronavirusDomain
VA [auth J]IPR018995RNA synthesis protein NSP10, coronavirusDomain
VA [auth J]IPR043615Nonstructural protein 2, N-terminal domain, coronavirusDomain
VA [auth J]IPR043177Papain-like protease, N-terminal domain superfamily, coronavirusHomologous Superfamily
VA [auth J]IPR043606Coronavirus replicase NSP15, N-terminal oligomerizationDomain
VA [auth J]IPR044330Nonstructural protein 15, N-terminal domain, alpha/beta-coronavirusDomain
VA [auth J]IPR041679DNA2/NAM7 helicase-like, C-terminalDomain
VA [auth J]IPR024375Non-structural protein NSP3, SUD-M domain, betacoronavirusDomain
VA [auth J]IPR014828Non-structural protein NSP7, coronavirusDomain
VA [auth J]IPR043503Papain-like viral protease, palm and finger domains, coronavirusHomologous Superfamily
VA [auth J]IPR014829Non-structural protein NSP8, coronavirusDomain
VA [auth J]IPR036499Non-structural protein NSP9 superfamily, coronavirusHomologous Superfamily
VA [auth J]IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
VA [auth J]IPR044389Non-structural protein 2, SARS-CoV-likeDomain
VA [auth J]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
VA [auth J]IPR008740Peptidase C30, coronavirusDomain
VA [auth J]IPR036333RNA synthesis protein NSP10 superfamily, coronavirusHomologous Superfamily
VA [auth J]IPR047573Non-structural protein 2, middle domain, coronavirusDomain
VA [auth J]IPR043472Macro domain-likeHomologous Superfamily
VA [auth J]IPR043609NendoU domain, nidovirusDomain
VA [auth J]IPR032592Non-structural protein NSP3, nucleic acid-binding domain, betacoronavirusDomain
VA [auth J]IPR043613Non-structural protein 2, C-terminal domain, coronavirusDomain
VA [auth J]IPR038083Non-structural protein NSP3A domain-like superfamilyHomologous Superfamily
VA [auth J]IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
VA [auth J]IPR044351RNA-dependent RNA polymerase, SARS-CoV-likeDomain
VA [auth J]IPR024358Non-structural protein NSP3, N-terminal, betacoronavirusDomain
VA [auth J]IPR048673Nonstructural protein 13, stalk domain, coronavirusDomain
VA [auth J]IPR046435NSP14, guanine-N7-methyltransferase domain, coronavirusDomain
VA [auth J]IPR009469RNA-dependent RNA polymerase, N-terminal, coronavirusDomain
VA [auth J]IPR043611Coronavirus replicase NSP3, C-terminalDomain
VA [auth J]IPR044864Non-structural protein NSP3, SUD-N (Mac2) domain, betacoronavirusDomain
VA [auth J]IPR047566Coronavirus replicase NSP3, Y domainDomain
VA [auth J]IPR048672Nonstructural protein 13, zinc-binding domain, coronavirusDomain
VA [auth J]IPR043612Non-structural protein NSP4, N-terminal, coronavirusDomain
VA [auth J]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
VA [auth J]IPR043608Nonstructural protein 15, middle domain, coronavirusDomain
VA [auth J]IPR044353NSP3, second ubiquitin-like (Ubl) domain, coronavirusDomain
VA [auth J]IPR037204Non-structural protein NSP7 superfamily, coronavirusHomologous Superfamily
VA [auth J]IPR046443NSP1, globular domain, alpha/betacoronavirusDomain
VA [auth J]IPR043610Non-structural protein 6, coronavirusDomain
VA [auth J]IPR027351(+) RNA virus helicase core domainDomain
VA [auth J]IPR044322Nonstructural protein 15, middle domain, alpha/betacoronavirusDomain
VA [auth J]IPR009461Non-structural protein NSP16, coronavirus-likeDomain
VA [auth J]IPR043477Peptidase C30, domain 3, coronavirusHomologous Superfamily
VA [auth J]IPR043478Non-structural protein NSP3, SUD-N (Mac2) domain superfamily, betacoronavirusHomologous Superfamily
VA [auth J]IPR038400Non-structural protein NSP3, SUD-M domain superfamily, betacoronavirusHomologous Superfamily
VA [auth J]IPR046442NSP1, C-terminal domain, betacoronavirusDomain
VA [auth J]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
VA [auth J]IPR044401NSP15, NendoU domain, coronavirusDomain
VA [auth J]IPR014822Non-structural protein NSP9, coronavirusDomain
VA [auth J]IPR038030NSP1 globular domain superfamily, betacoronavirusHomologous Superfamily
VA [auth J]IPR021590NSP1, globular domain, betacoronavirusDomain
VA [auth J]IPR044367Non-structural protein 6, betacoronavirusDomain
VA [auth J]IPR037230Non-structural protein NSP8 superfamily, coronavirusHomologous Superfamily
VA [auth J]IPR046440Arterivirus Nsp11 N-terminal/Coronavirus NSP15 middle domainDomain
VA [auth J]IPR032505Non-structural protein NSP4, C-terminal, coronavirusDomain
VA [auth J]IPR046438Nidovirus 2-O-methyltransferaseDomain
VA [auth J]IPR002589Macro domainDomain
VA [auth J]IPR047567Non-structural protein NSP3, group 2-specific marker domain, betacoronavirusDomain
VA [auth J]IPR044371Non-structural protein 3, X-domain-likeDomain
VA [auth J]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
A [auth a]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
A [auth a]IPR001865Small ribosomal subunit protein uS2Family
A [auth a]IPR032281Small ribosomal subunit protein uS2, C-terminal domainDomain
A [auth a]IPR027504Small ribosomal subunit protein uS2, vertebratesFamily
A [auth a]IPR005707Small ribosomal subunit protein uS2, eukaryotic/archaealFamily
A [auth a]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
A [auth a]IPR027498Small ribosomal subunit protein uS2, eukaryoticFamily
IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
IPR000592Small ribosomal subunit protein eS27Family
IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
CA [auth x]IPR018277Small ribosomal subunit protein eS19, conserved siteConserved Site
CA [auth x]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
CA [auth x]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
CA [auth x]IPR001266Small ribosomal subunit protein eS19Family
FA [auth S]IPR028626Ribosomal protein eS28 conserved siteConserved Site
FA [auth S]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
FA [auth S]IPR000289Small ribosomal subunit protein eS28Family
HA [auth U]IPR019954Ubiquitin conserved siteConserved Site
HA [auth U]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
HA [auth U]IPR000626Ubiquitin-like domainDomain
HA [auth U]IPR038582Small ribosomal subunit protein eS31 eukaryotic-type superfamilyHomologous Superfamily
HA [auth U]IPR002906Small ribosomal subunit protein eS31Domain
HA [auth U]IPR019956Ubiquitin domainDomain
HA [auth U]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
D [auth Q]IPR047864Ribosomal protein eS26, conserved siteConserved Site
D [auth Q]IPR038551Ribosomal protein eS26 superfamilyHomologous Superfamily
D [auth Q]IPR000892Small ribosomal subunit protein eS26Family
PA [auth H]IPR027524Eukaryotic translation initiation factor 3 subunit HFamily
PA [auth H]IPR045810eIF3h, C-terminalDomain
PA [auth H]IPR037518MPN domainDomain
PA [auth H]IPR000555JAB1/MPN/MOV34 metalloenzyme domainDomain
QA [auth K]IPR016024Armadillo-type foldHomologous Superfamily
QA [auth K]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
QA [auth K]IPR033464CSN8/PSMD8/EIF3KDomain
QA [auth K]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
QA [auth K]IPR016020Translation initiation factor 3, subunit 12, N-terminal, eukaryoticHomologous Superfamily
QA [auth K]IPR000717Proteasome component (PCI) domainDomain
QA [auth K]IPR009374Eukaryotic translation initiation factor 3 subunit KFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
C [auth d]PharosP15880
E [auth q]PharosP62701
F [auth W]PharosP62945
G [auth r]PharosP62753
H [auth s]PharosP62081
I [auth t]PharosP62241
J [auth c]PharosP46781
K [auth n]PharosP62280
L [auth m]PharosP62277
M [auth i]PharosP62263
N [auth y]PharosP63220
O [auth f]PharosP62244
P [auth j]PharosP62266
Q [auth z]PharosP62847
S [auth T]PharosP62861
U [auth w]PharosP08708
V [auth g]PharosP62249
W [auth b]PharosP23396
X [auth e]PharosP46782
Y [auth u]PharosP46783
Z [auth v]PharosP25398
AA [auth o]PharosP62841
BA [auth k]PharosP62269
DA [auth h]PharosP60866
EA [auth P]PharosP62851
GA [auth l]PharosP62273
IA [auth V]PharosP63244
JA [auth I]PharosQ13347
KA [auth B]PharosP55884
LA [auth A]PharosQ14152
MA [auth C]PharosQ99613
NA [auth E]PharosP60228
OA [auth F]PharosO00303
SA [auth M]PharosQ7L2H7
TA [auth D]PharosO15371
A [auth a]PharosP08865
PharosP42677
CA [auth x]PharosP39019
FA [auth S]PharosP62857
HA [auth U]PharosP62979
D [auth Q]PharosP62854
PA [auth H]PharosO15372
QA [auth K]PharosQ9UBQ5