6XYW
Structure of the plant mitochondrial ribosome
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C [auth Ac] | SCOP2 Family | Ribosomal protein L3 | 8095650 | 4002103 | SCOP2 (2022-06-29) |
C [auth Ac] | SCOP2 Superfamily | Translational proteins | 8095651 | 3000811 | SCOP2 (2022-06-29) |
K [auth Ak] | SCOP2 Family | Ribosomal protein L14 | 8095278 | 4001826 | SCOP2 (2022-06-29) |
K [auth Ak] | SCOP2 Superfamily | 50S Ribosomal protein L14-like | 8095279 | 3000433 | SCOP2 (2022-06-29) |
M [auth Am] | SCOP2 Family | Ribosomal protein L16p | 8095346 | 4003717 | SCOP2 (2022-06-29) |
M [auth Am] | SCOP2 Superfamily | Ribosomal protein L16p/L10e | 8095347 | 3000884 | SCOP2 (2022-06-29) |
Q [auth Aq] | SCOP2 Family | Ribosomal protein L20 | 8095200 | 4001930 | SCOP2 (2022-06-29) |
Q [auth Aq] | SCOP2 Superfamily | Ribosomal protein L20 | 8095201 | 3000563 | SCOP2 (2022-06-29) |
W [auth Aw] | SCOP2 Family | Ribosomal L27 protein | 8094966 | 4001900 | SCOP2 (2022-06-29) |
W [auth Aw] | SCOP2 Superfamily | Ribosomal L27 protein-like | 8094967 | 3000539 | SCOP2 (2022-06-29) |
CA [auth AE] | SCOP2 Family | Ribosomal protein L36 | 8093965 | 4003715 | SCOP2 (2022-06-29) |
CA [auth AE] | SCOP2 Superfamily | Ribosomal protein L36 | 8093966 | 3001346 | SCOP2 (2022-06-29) |
WA [auth Bl] | SCOP2 Family | Ribosomal protein S13 | 8100463 | 4000260 | SCOP2 (2022-06-29) |
WA [auth Bl] | SCOP2 Superfamily | S13-like H2TH domain | 8100464 | 3000053 | SCOP2 (2022-06-29) |
LB [auth Bg] | SCOP2 Family | Ribosomal protein S8 | 8100583 | 4002027 | SCOP2 (2022-06-29) |
LB [auth Bg] | SCOP2 Superfamily | Ribosomal protein S8 | 8100584 | 3000709 | SCOP2 (2022-06-29) |
YB [auth BE] | SCOP2 Family | beta-hydroxyisobutyryl-CoA hydrolase-like | 8100239 | 4004188 | SCOP2 (2022-06-29) |
YB [auth BE] | SCOP2 Superfamily | ClpP/crotonase | 8100240 | 3000033 | SCOP2 (2022-06-29) |
J [auth Aj] | SCOP2 Family | Ribosomal protein L13 | 8100017 | 4003623 | SCOP2 (2022-06-29) |
J [auth Aj] | SCOP2 Superfamily | Ribosomal protein L13 | 8100018 | 3001134 | SCOP2 (2022-06-29) |
O [auth Ao] | SCOP2 Family | Ribosomal protein L18p and S11 | 8100177 | 4000555 | SCOP2 (2022-06-29) |
O [auth Ao] | SCOP2 Superfamily | Translational machinery components | 8100178 | 3000571 | SCOP2 (2022-06-29) |
P [auth Ap] | SCOP2 Family | Ribosomal protein L19 | 8098169 | 4001761 | SCOP2 (2022-06-29) |
P [auth Ap] | SCOP2 Superfamily | Translation proteins SH3-like KOW motif containing domain | 8098170 | 3000334 | SCOP2 (2022-06-29) |
S [auth As] | SCOP2 Family | Ribosomal protein L22 | 8099547 | 4001212 | SCOP2 (2022-06-29) |
S [auth As] | SCOP2 Superfamily | Ribosomal protein L22 | 8099548 | 3001078 | SCOP2 (2022-06-29) |
B [auth Ab] | SCOP2 Family | C-terminal domain of ribosomal protein L2 | 8095576 | 4001762 | SCOP2 (2022-06-29) |
B [auth Ab] | SCOP2 Superfamily | Translation proteins SH3-like KOW motif containing domain | 8095577 | 3000334 | SCOP2 (2022-06-29) |
BA [auth AC] | SCOP2 Family | Ribosomal protein L33p | 8095354 | 4000511 | SCOP2 (2022-06-29) |
BA [auth AC] | SCOP2 Superfamily | Zn-binding ribosomal proteins | 8095355 | 3001320 | SCOP2 (2022-06-29) |
TA [auth Bf] | SCOP2 Family | Ribosomal protein S7 | 8098971 | 4001112 | SCOP2 (2022-06-29) |
TA [auth Bf] | SCOP2 Superfamily | Ribosomal protein S7 | 8098972 | 3000799 | SCOP2 (2022-06-29) |
UA [auth Bh] | SCOP2 Family | Translational machinery components | 8095240 | 4000951 | SCOP2 (2022-06-29) |
UA [auth Bh] | SCOP2 Superfamily | Ribosomal protein S5 domain 2-like | 8095241 | 3000100 | SCOP2 (2022-06-29) |
E [auth Ad] | SCOP2 Family | Ribosomal protein L4 | 8100275 | 4003628 | SCOP2 (2022-06-29) |
E [auth Ad] | SCOP2 Superfamily | Ribosomal protein L4 | 8100276 | 3001146 | SCOP2 (2022-06-29) |
XA [auth Bm] | SCOP2 Family | Ribosomal protein S14p/S29e | 8100655 | 4003647 | SCOP2 (2022-06-29) |
XA [auth Bm] | SCOP2 Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8100656 | 3000068 | SCOP2 (2022-06-29) |
YA [auth Br] | SCOP2 Family | Ribosomal protein S19 | 8095340 | 4001081 | SCOP2 (2022-06-29) |
YA [auth Br] | SCOP2 Superfamily | Ribosomal protein S19 | 8095341 | 3000686 | SCOP2 (2022-06-29) |
MB [auth Bj] | SCOP2 Family | Ribosomal protein L18p and S11 | 8100277 | 4000555 | SCOP2 (2022-06-29) |
MB [auth Bj] | SCOP2 Superfamily | Translational machinery components | 8100278 | 3000571 | SCOP2 (2022-06-29) |
OB [auth Bo] | SCOP2 Family | Ribosomal protein S16 | 8095700 | 4001077 | SCOP2 (2022-06-29) |
OB [auth Bo] | SCOP2 Superfamily | Ribosomal protein S16 | 8095701 | 3000680 | SCOP2 (2022-06-29) |
PB [auth Bp] | SCOP2 Family | Cold shock DNA-binding domain-like | 8100727 | 4001909 | SCOP2 (2022-06-29) |
PB [auth Bp] | SCOP2 Superfamily | Nucleic acid-binding proteins | 8100728 | 3000135 | SCOP2 (2022-06-29) |
G [auth Af] | SCOP2 Family | Ribosomal protein L6 | 8095656 | 4002033 | SCOP2 (2022-06-29) |
G [auth Af] | SCOP2 Superfamily | Ribosomal protein L6 | 8095657 | 3000724 | SCOP2 (2022-06-29) |
KC [auth Bk] | SCOP2 Family | Cold shock DNA-binding domain-like | 8094896 | 4001909 | SCOP2 (2022-06-29) |
KC [auth Bk] | SCOP2 Superfamily | Nucleic acid-binding proteins | 8094897 | 3000135 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth Ac] | Ribosomal_L3 | e6xywAc1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Ribosomal_L3 | ECOD (1.6) |
H [auth Ag] | Ribosomal_L9_N | e6xywAg1 | A: a+b two layers | X: L9 N-domain-like | H: L9 N-domain-like (From Topology) | T: L9 N-domain-like | F: Ribosomal_L9_N | ECOD (1.6) |
K [auth Ak] | Ribosomal_L14 | e6xywAk1 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: Ribosomal_L14 | ECOD (1.6) |
L [auth Al] | Ribosomal_L27A | e6xywAl1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: Ribosomal_L27A | ECOD (1.6) |
M [auth Am] | Ribosomal_L16 | e6xywAm1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal protein L10e | F: Ribosomal_L16 | ECOD (1.6) |
Q [auth Aq] | Ribosomal_L20 | e6xywAq1 | A: alpha arrays | X: PABP domain-like | H: Ribosomal protein L20 (From Topology) | T: Ribosomal protein L20 | F: Ribosomal_L20 | ECOD (1.6) |
W [auth Aw] | Ribosomal_L27 | e6xywAw1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal L27 protein | F: Ribosomal_L27 | ECOD (1.6) |
X [auth Ax] | Ribosomal_L28_1 | e6xywAx1 | A: few secondary structure elements | X: Ribosomal protein bL28-related (From Homology) | H: Ribosomal protein bL28-related | T: Ribosomal protein L28 | F: Ribosomal_L28_1 | ECOD (1.6) |
Y [auth Ay] | MRP-L47 | e6xywAy1 | A: alpha bundles | X: Long alpha-hairpin | H: Ribosomal protein L29 (L29p) (From Topology) | T: Ribosomal protein L29 (L29p) | F: MRP-L47 | ECOD (1.6) |
CA [auth AE] | Ribosomal_L36 | e6xywAE1 | A: few secondary structure elements | X: Ribosomal protein L36 (From Topology) | H: Ribosomal protein L36 (From Topology) | T: Ribosomal protein L36 | F: Ribosomal_L36 | ECOD (1.6) |
FA [auth AH] | L51_S25_CI-B8 | e6xywAH1 | A: a+b three layers | X: Thioredoxin-like | H: Thioredoxin-like (From Topology) | T: Thioredoxin-like | F: L51_S25_CI-B8 | ECOD (1.6) |
GA [auth AI] | MRP-L46 | e6xywAI1 | A: a+b two layers | X: beta-Grasp | H: Nudix (From Topology) | T: Nudix | F: MRP-L46 | ECOD (1.6) |
HA [auth AJ] | MRP_L53 | e6xywAJ1 | A: a+b three layers | X: Thioredoxin-like | H: Thioredoxin-like (From Topology) | T: Thioredoxin-like | F: MRP_L53 | ECOD (1.6) |
VA [auth Bi] | Ribosomal_S10 | e6xywBi1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S10 (From Topology) | T: Ribosomal protein S10 | F: Ribosomal_S10 | ECOD (1.6) |
WA [auth Bl] | Ribosomal_S13_2 | e6xywBl1 | A: alpha arrays | X: HhH/H2TH | H: H2TH (From Topology) | T: H2TH | F: Ribosomal_S13_2 | ECOD (1.6) |
ZA [auth Bw] | UNK_F_TYPE | e6xywBw1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: UNK_F_TYPE | ECOD (1.6) |
ZA [auth Bw] | DAP3_N | e6xywBw2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: DAP3_N | ECOD (1.6) |
AB [auth Bx] | MRP-S33_1 | e6xywBx1 | A: extended segments | X: Mitoribosomal protein mS33 (From Topology) | H: Mitoribosomal protein mS33 (From Topology) | T: Mitoribosomal protein mS33 | F: MRP-S33_1 | ECOD (1.6) |
HB [auth Ba] | Ribosomal_S2 | e6xywBa1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Ribosomal protein S2/SIS domain (From Topology) | T: Ribosomal protein S2/SIS domain | F: Ribosomal_S2 | ECOD (1.6) |
KB [auth Be] | Ribosomal_S6_1 | e6xywBe1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S6 (From Topology) | T: Ribosomal protein S6 | F: Ribosomal_S6_1 | ECOD (1.6) |
LB [auth Bg] | Ribosomal_S8_N_1 | e6xywBg1 | A: a+b two layers | X: R3H domain-like | H: Ribosomal protein S8, N-terminal domain (From Topology) | T: Ribosomal protein S8, N-terminal domain | F: Ribosomal_S8_N_1 | ECOD (1.6) |
LB [auth Bg] | Ribosomal_S8_C_1 | e6xywBg2 | A: a+b two layers | X: Ribosomal protein S8, C-terminal domain (From Topology) | H: Ribosomal protein S8, C-terminal domain (From Topology) | T: Ribosomal protein S8, C-terminal domain | F: Ribosomal_S8_C_1 | ECOD (1.6) |
YB [auth BE] | ECH_1 | e6xywBE1 | A: a/b three-layered sandwiches | X: ClpP/crotonase (From Topology) | H: ClpP/crotonase (From Topology) | T: ClpP/crotonase | F: ECH_1 | ECOD (1.6) |
A [auth Aa] | Ribosomal_L2 | e6xywAa1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosomal_L2 | ECOD (1.6) |
J [auth Aj] | Ribosomal_L13 | e6xywAj1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L13 and L16-A (From Topology) | T: Ribosomal protein L13 and L16-A | F: Ribosomal_L13 | ECOD (1.6) |
O [auth Ao] | Ribosomal_L18p | e6xywAo1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Ribosomal_L18p | ECOD (1.6) |
P [auth Ap] | Ribosomal_L19 | e6xywAp1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L19 | ECOD (1.6) |
R [auth Ar] | Ribosomal_L21p | e6xywAr1 | A: beta barrels | X: Ribosomal protein L21p (From Topology) | H: Ribosomal protein L21p (From Topology) | T: Ribosomal protein L21p | F: Ribosomal_L21p | ECOD (1.6) |
S [auth As] | Ribosomal_L22 | e6xywAs1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Ribosomal protein L22 (From Topology) | T: Ribosomal protein L22 | F: Ribosomal_L22 | ECOD (1.6) |
B [auth Ab] | Ribosomal_L2_C_1 | e6xywAb1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L2_C_1 | ECOD (1.6) |
T [auth At] | Ribosomal_L23_2 | e6xywAt1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: Ribosomal_L23_2 | ECOD (1.6) |
U [auth Au] | ribosomal_L24_1 | e6xywAu1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: ribosomal_L24_1 | ECOD (1.6) |
V [auth Av] | Ribosomal_L25p | e6xywAv1 | A: beta barrels | X: Ribosomal protein L25-like | H: Ribosomal protein L25-like (From Topology) | T: Ribosomal protein L25-like | F: Ribosomal_L25p | ECOD (1.6) |
V [auth Av] | Ribosomal_TL5_C | e6xywAv2 | A: a+b complex topology | X: Ribosomal protein TL5/L25 C-terminal domain-like | H: Ribosomal protein TL5/L25 C-terminal domain-related (From Topology) | T: Ribosomal protein TL5/L25 C-terminal domain-related | F: Ribosomal_TL5_C | ECOD (1.6) |
AA [auth AB] | Ribosomal_L32p | e6xywAB1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_L32p | ECOD (1.6) |
BA [auth AC] | Ribosomal_L33 | e6xywAC1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_L33 | ECOD (1.6) |
DA [auth AF] | UNK_F_TYPE | e6xywAF1 | A: extended segments | X: Mitochondrial 54S ribosomal protein L28 (From Topology) | H: Mitochondrial 54S ribosomal protein L28 (From Topology) | T: Mitochondrial 54S ribosomal protein L28 | F: UNK_F_TYPE | ECOD (1.6) |
KA [auth AM] | UNK_F_TYPE | e6xywAM1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: UNK_F_TYPE | ECOD (1.6) |
D [auth AD] | Ribosomal_L35p | e6xywAD1 | A: a+b two layers | X: Ribosomal protein L35p (From Topology) | H: Ribosomal protein L35p (From Topology) | T: Ribosomal protein L35p | F: Ribosomal_L35p | ECOD (1.6) |
NA [auth AP] | UNK_F_TYPE | e6xywAP1 | A: beta duplicates or obligate multimers | X: Single-stranded right-handed beta-helix | H: Serralysin-like metalloprotease-C (From Topology) | T: Serralysin-like metalloprotease-C | F: UNK_F_TYPE | ECOD (1.6) |
TA [auth Bf] | Ribosomal_S7_1 | e6xywBf1 | A: alpha arrays | X: Ribosomal protein S7 (From Topology) | H: Ribosomal protein S7 (From Topology) | T: Ribosomal protein S7 | F: Ribosomal_S7_1 | ECOD (1.6) |
UA [auth Bh] | Ribosomal_S9 | e6xywBh1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: Ribosomal_S9 | ECOD (1.6) |
E [auth Ad] | Ribosomal_L4 | e6xywAd1 | A: a/b three-layered sandwiches | X: Ribosomal protein L4 (From Topology) | H: Ribosomal protein L4 (From Topology) | T: Ribosomal protein L4 | F: Ribosomal_L4 | ECOD (1.6) |
XA [auth Bm] | Ribosomal_S14_1 | e6xywBm1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: Ribosomal_S14_1 | ECOD (1.6) |
YA [auth Br] | Ribosomal_S19 | e6xywBr1 | A: a+b two layers | X: Ribosomal protein S19 (From Topology) | H: Ribosomal protein S19 (From Topology) | T: Ribosomal protein S19 | F: Ribosomal_S19 | ECOD (1.6) |
BB [auth Bz] | UNK_F_TYPE | e6xywBz1 | A: a+b two layers | X: dsRBD-like | H: Peptidyl-tRNA hydrolase domain-like (From Topology) | T: Peptidyl-tRNA hydrolase domain-like | F: UNK_F_TYPE | ECOD (1.6) |
CB [auth BA] | UNK_F_TYPE | e6xywBA1 | A: few secondary structure elements | X: p8-MTCP1-related (From Topology) | H: p8-MTCP1-related (From Topology) | T: p8-MTCP1-related | F: UNK_F_TYPE | ECOD (1.6) |
F [auth Ae] | Ribosomal_L5_C | e6xywAe1 | A: a+b two layers | X: Ribosomal protein L5 (From Topology) | H: Ribosomal protein L5 (From Topology) | T: Ribosomal protein L5 | F: Ribosomal_L5_C | ECOD (1.6) |
MB [auth Bj] | Ribosomal_S11 | e6xywBj1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Ribosomal_S11 | ECOD (1.6) |
NB [auth Bn] | Ribosomal_S15_1 | e6xywBn1 | A: alpha arrays | X: S15/NS1 RNA-binding domain (From Topology) | H: S15/NS1 RNA-binding domain (From Topology) | T: S15/NS1 RNA-binding domain | F: Ribosomal_S15_1 | ECOD (1.6) |
OB [auth Bo] | Ribosomal_S16 | e6xywBo1 | A: a+b two layers | X: Ribosomal protein S16 (From Topology) | H: Ribosomal protein S16 (From Topology) | T: Ribosomal protein S16 | F: Ribosomal_S16 | ECOD (1.6) |
PB [auth Bp] | Ribosomal_S17_1 | e6xywBp1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosomal_S17_1 | ECOD (1.6) |
QB [auth Bq] | Ribosomal_S18 | e6xywBq1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Ribosomal_S18 | ECOD (1.6) |
G [auth Af] | Ribosomal_L6_1 | e6xywAf1 | A: a+b two layers | X: Ribosomal protein L6 (From Topology) | H: Ribosomal protein L6 (From Topology) | T: Ribosomal protein L6 | F: Ribosomal_L6_1 | ECOD (1.6) |
RB [auth Bs] | UNK_F_TYPE | e6xywBs1 | A: extended segments | X: 30S ribosomal protein S21 (From Topology) | H: 30S ribosomal protein S21 (From Topology) | T: 30S ribosomal protein S21 | F: UNK_F_TYPE | ECOD (1.6) |
SB [auth Bu] | UNK_F_TYPE | e6xywBu1 | A: alpha arrays | X: RuvA-C | H: Mitoribosomal protein mS23 (From Topology) | T: Mitoribosomal protein mS23 | F: UNK_F_TYPE | ECOD (1.6) |
TB [auth Bv] | MRP-S26 | e6xywBv1 | A: extended segments | X: Mitoribosomal protein mS26 (From Topology) | H: Mitoribosomal protein mS26 (From Topology) | T: Mitoribosomal protein mS26 | F: MRP-S26 | ECOD (1.6) |
WB [auth BC] | UNK_F_TYPE | e6xywBC1 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: UNK_F_TYPE | ECOD (1.6) |
HC [auth Az] | Ribosomal_L30 | e6xywAz1 | A: a+b two layers | X: Ribosomal protein L30p/L7e (From Topology) | H: Ribosomal protein L30p/L7e (From Topology) | T: Ribosomal protein L30p/L7e | F: Ribosomal_L30 | ECOD (1.6) |
IC [auth Ah] | Ribosomal_L10 | e6xywAh1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein L10-like (From Topology) | T: Ribosomal protein L10-like | F: Ribosomal_L10 | ECOD (1.6) |
KC [auth Bk] | Ribosom_S12_S23 | e6xywBk1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosom_S12_S23 | ECOD (1.6) |
I [auth Ai] | Ribosomal_L11 | e6xywAi2 | A: alpha arrays | X: HTH | H: HTH | T: Ribosomal protein L11, C-terminal domain | F: Ribosomal_L11 | ECOD (1.6) |
I [auth Ai] | Ribosomal_L11_N | e6xywAi1 | A: a+b two layers | X: Ribosomal protein L11/L12e N-terminal domain-like | H: Ribosomal protein L11/L12e N-terminal domain (From Topology) | T: Ribosomal protein L11/L12e N-terminal domain | F: Ribosomal_L11_N | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
C [auth Ac] | PF00297 | Ribosomal protein L3 (Ribosomal_L3) | Ribosomal protein L3 | - | Family |
H [auth Ag] | PF01281 | Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N) | Ribosomal protein L9, N-terminal domain | - | Domain |
K [auth Ak] | PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | - | Domain |
L [auth Al] | PF00828 | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | - | Family |
M [auth Am] | PF00252 | Ribosomal protein L16p/L10e (Ribosomal_L16) | Ribosomal protein L16p/L10e | - | Domain |
Q [auth Aq] | PF00453 | Ribosomal protein L20 (Ribosomal_L20) | Ribosomal protein L20 | - | Family |
W [auth Aw] | PF01016 | Ribosomal L27 protein (Ribosomal_L27) | Ribosomal L27 protein | - | Family |
X [auth Ax] | PF00830 | Ribosomal L28 family (Ribosomal_L28) | Ribosomal L28 family | - | Family |
Y [auth Ay] | PF06984 | Mitochondrial 39-S ribosomal protein L47 (MRP-L47) (MRP-L47) | Mitochondrial 39-S ribosomal protein L47 (MRP-L47) | - | Family |
CA [auth AE] | PF00444 | Ribosomal protein L36 (Ribosomal_L36) | Ribosomal protein L36 | - | Domain |
FA [auth AH] | PF05047 | Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain (L51_S25_CI-B8) | Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain | The proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all member ... | Domain |
HA [auth AJ] | PF10780 | 39S ribosomal protein L53/MRP-L53 (MRP_L53) | 39S ribosomal protein L53/MRP-L53 | - | Family |
VA [auth Bi] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |
WA [auth Bl] | PF00416 | Ribosomal protein S13/S18 (Ribosomal_S13) | Ribosomal protein S13/S18 | - | Family |
AB [auth Bx] | PF08293 | Mitochondrial ribosomal subunit S27 (MRP-S33) | Mitochondrial ribosomal subunit S27 | - | Family |
DB [auth Bt] | PF17067 | Ribosomal protein S31e (RPS31) | Ribosomal protein S31e | - | Family |
EB [auth BG] | PF01535 | PPR repeat (PPR) | PPR repeat | - | Repeat |
EB [auth BG] | PF13041 | PPR repeat family (PPR_2) | PPR repeat family | - | Repeat |
HB [auth Ba] | PF00318 | Ribosomal protein S2 (Ribosomal_S2) | Ribosomal protein S2 | - | Family |
JB [auth Bd] | PF03719 | Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) | Ribosomal protein S5, C-terminal domain | - | Domain |
JB [auth Bd] | PF00333 | Ribosomal protein S5, N-terminal domain (Ribosomal_S5) | Ribosomal protein S5, N-terminal domain | - | Domain |
KB [auth Be] | PF01250 | Ribosomal protein S6 (Ribosomal_S6) | Ribosomal protein S6 | - | Domain |
LB [auth Bg] | PF00410 | Ribosomal protein S8 (Ribosomal_S8) | Ribosomal protein S8 | - | Domain |
YB [auth BE] | PF16113 | Enoyl-CoA hydratase/isomerase (ECH_2) | Enoyl-CoA hydratase/isomerase | This family contains a diverse set of enzymes including: enoyl-CoA hydratase, napthoate synthase, carnitate racemase, 3-hydroxybutyryl-CoA dehydratase and dodecanoyl-CoA delta-isomerase. This family differs from Pfam:PF00378 in the structure of it's ... | Domain |
A [auth Aa] | PF00181 | Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2) | Ribosomal Proteins L2, RNA binding domain | - | Domain |
J [auth Aj] | PF00572 | Ribosomal protein L13 (Ribosomal_L13) | Ribosomal protein L13 | - | Family |
N [auth An] | PF01196 | Ribosomal protein L17 (Ribosomal_L17) | Ribosomal protein L17 | - | Family |
O [auth Ao] | PF00861 | Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p) | Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast | - | Family |
P [auth Ap] | PF01245 | Ribosomal protein L19 (Ribosomal_L19) | Ribosomal protein L19 | - | Family |
R [auth Ar] | PF00829 | Ribosomal prokaryotic L21 protein (Ribosomal_L21p) | Ribosomal prokaryotic L21 protein | - | Family |
S [auth As] | PF00237 | Ribosomal protein L22p/L17e (Ribosomal_L22) | Ribosomal protein L22p/L17e | This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. | Domain |
B [auth Ab] | PF03947 | Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) | Ribosomal Proteins L2, C-terminal domain | - | Domain |
T [auth At] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |
U [auth Au] | PF17136 | Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24) | Ribosomal proteins 50S L24/mitochondrial 39S L24 | - | Family |
U [auth Au] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
V [auth Av] | PF14693 | Ribosomal protein TL5, C-terminal domain (Ribosomal_TL5_C) | Ribosomal protein TL5, C-terminal domain | This family contains the C-terminal domain of ribosomal protein TL5. The N-terminal domain, which binds to 5S rRNA, is contained in family Ribosomal_L25p, Pfam:PF01386. Full length (N- and C-terminal domain) homologues of TL5 are also known as CTC pr ... | Domain |
AA [auth AB] | PF01783 | Ribosomal L32p protein family (Ribosomal_L32p) | Ribosomal L32p protein family | - | Family |
BA [auth AC] | PF00471 | Ribosomal protein L33 (Ribosomal_L33) | Ribosomal protein L33 | - | Family |
EA [auth AG] | PF09809 | Mitochondrial ribosomal protein L27 (MRP-L27) | Mitochondrial ribosomal protein L27 | - | Family |
MA [auth AO] | PF01535 | PPR repeat (PPR) | PPR repeat | - | Repeat |
D [auth AD] | PF01632 | Ribosomal protein L35 (Ribosomal_L35p) | Ribosomal protein L35 | - | Family |
OA [auth AQ] | PF13812 | Pentatricopeptide repeat domain (PPR_3) | Pentatricopeptide repeat domain | - | Repeat |
OA [auth AQ] | PF01535 | PPR repeat (PPR) | PPR repeat | - | Repeat |
OA [auth AQ] | PF13041 | PPR repeat family (PPR_2) | PPR repeat family | - | Repeat |
SA [auth Bb] | PF00189 | Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) | Ribosomal protein S3, C-terminal domain | This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. | Domain |
TA [auth Bf] | PF00177 | Ribosomal protein S7p/S5e (Ribosomal_S7) | Ribosomal protein S7p/S5e | This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. | Domain |
UA [auth Bh] | PF00380 | Ribosomal protein S9/S16 (Ribosomal_S9) | Ribosomal protein S9/S16 | - | Family |
E [auth Ad] | PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family |
XA [auth Bm] | PF00253 | Ribosomal protein S14p/S29e (Ribosomal_S14) | Ribosomal protein S14p/S29e | - | Family |
YA [auth Br] | PF00203 | Ribosomal protein S19 (Ribosomal_S19) | Ribosomal protein S19 | - | Domain |
BB [auth Bz] | PF10213 | Mitochondrial ribosomal subunit protein (MRP-S28) | Mitochondrial ribosomal subunit protein | - | Family |
CB [auth BA] | PF16860 | CHCH-CHCH-like Cx9C, IMS import disulfide relay-system, (CX9C) | CHCH-CHCH-like Cx9C, IMS import disulfide relay-system, | CX9C is the first half of a twin Cx9C motif in eukaryotic proteins. The function of this motif is to import nuclear-encoded mitochondrial intermembrane-space-proteins into the IMS (intermembrane space), as these latter lack a mitochondrial targeting ... | Domain |
IB [auth Bc] | PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain |
MB [auth Bj] | PF00411 | Ribosomal protein S11 (Ribosomal_S11) | Ribosomal protein S11 | - | Family |
NB [auth Bn] | PF00312 | Ribosomal protein S15 (Ribosomal_S15) | Ribosomal protein S15 | - | Domain |
OB [auth Bo] | PF00886 | Ribosomal protein S16 (Ribosomal_S16) | Ribosomal protein S16 | - | Family |
PB [auth Bp] | PF00366 | Ribosomal protein S17 (Ribosomal_S17) | Ribosomal protein S17 | - | Domain |
QB [auth Bq] | PF01084 | Ribosomal protein S18 (Ribosomal_S18) | Ribosomal protein S18 | - | Family |
G [auth Af] | PF00347 | Ribosomal protein L6 (Ribosomal_L6) | Ribosomal protein L6 | - | Domain |
RB [auth Bs] | PF01165 | Ribosomal protein S21 (Ribosomal_S21) | Ribosomal protein S21 | - | Family |
UB [auth By] | PF16053 | Mitochondrial 28S ribosomal protein S34 (MRP-S34) | Mitochondrial 28S ribosomal protein S34 | - | Family |
WB [auth BC] | PF09597 | IGR protein motif (IGR) | IGR protein motif | This domain is found in fungal proteins and contains a conserved IGR motif. Its function is unknown. | Domain |
XB [auth BD] | PF12298 | Eukaryotic mitochondrial regulator protein (Bot1p) | Eukaryotic mitochondrial regulator protein | - | Family |
HC [auth Az] | PF00327 | Ribosomal protein L30p/L7e (Ribosomal_L30) | Ribosomal protein L30p/L7e | This family includes prokaryotic L30 and eukaryotic L7. | Domain |
IC [auth Ah] | PF00466 | Ribosomal protein L10 (Ribosomal_L10) | Ribosomal protein L10 | - | Family |
KC [auth Bk] | PF00164 | Ribosomal protein S12/S23 (Ribosom_S12_S23) | Ribosomal protein S12/S23 | - | Family |
I [auth Ai] | PF03946 | Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N) | Ribosomal protein L11, N-terminal domain | The N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. | Domain |
I [auth Ai] | PF00298 | Ribosomal protein L11, RNA binding domain (Ribosomal_L11) | Ribosomal protein L11, RNA binding domain | - | Domain |