6XIJ

Escherichia coli transcription-translation complex A (TTC-A) containing an 24 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
Z [auth L]SCOP2B SuperfamilyRibosomal protein S68066495 3001323 SCOP2B (2022-06-29)
AA [auth M]SCOP2B SuperfamilyRibosomal protein S78077979 3000799 SCOP2B (2022-06-29)
BA [auth N]SCOP2B SuperfamilyRibosomal protein S88079059 3000709 SCOP2B (2022-06-29)
CA [auth O]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like8082661 3000100 SCOP2B (2022-06-29)
DA [auth P]SCOP2B SuperfamilyRibosomal protein S108102681 3001336 SCOP2B (2022-06-29)
EA [auth Q]SCOP2B SuperfamilyTranslational machinery components8035368 3000571 SCOP2B (2022-06-29)
FA [auth R]SCOP2B SuperfamilyNucleic acid-binding proteins8106545 3000135 SCOP2B (2022-06-29)
HA [auth T]SCOP2B SuperfamilyS15/NS1 RNA-binding domain8032375 3001284 SCOP2B (2022-06-29)
JA [auth V]SCOP2B SuperfamilyNucleic acid-binding proteins8059276 3000135 SCOP2B (2022-06-29)
KA [auth W]SCOP2B SuperfamilyRibosomal protein S198103915 3000686 SCOP2B (2022-06-29)
LA [auth X]SCOP2B SuperfamilyS13-like H2TH domain8098358 3000053 SCOP2B (2022-06-29)
MA [auth Y]SCOP2B SuperfamilyRibosomal protein L11 C-terminal domain8032961 3001186 SCOP2B (2022-06-29)
MA [auth Y]SCOP2B SuperfamilyRibosomal L11/L12e N-terminal domain-like8032963 3000950 SCOP2B (2022-06-29)
PA [auth b]SCOP2B SuperfamilyRibosomal L27 protein-like8096338 3000539 SCOP2B (2022-06-29)
QA [auth c]SCOP2B SuperfamilyL28p-like8035424 3001966 SCOP2B (2022-06-29)
SA [auth e]SCOP2B SuperfamilyRibosomal protein L29 (L29p)8096370 3000713 SCOP2B (2022-06-29)
TA [auth f]SCOP2B SuperfamilyRibosomal protein L30p/L7e8096372 3001378 SCOP2B (2022-06-29)
UA [auth g]SCOP2B SuperfamilyL28p-like8032740 3001966 SCOP2B (2022-06-29)
VA [auth h]SCOP2B SuperfamilyNucleic acid-binding proteins8035394 3000135 SCOP2B (2022-06-29)
VA [auth h]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8035393 3000334 SCOP2B (2022-06-29)
XA [auth j]SCOP2B SuperfamilyTranslational proteins8032955 3000811 SCOP2B (2022-06-29)
YA [auth k]SCOP2B SuperfamilyZn-binding ribosomal proteins8096362 3001320 SCOP2B (2022-06-29)
ZA [auth l]SCOP2B SuperfamilyRibosomal protein L48096356 3001146 SCOP2B (2022-06-29)
BB [auth n]SCOP2B SuperfamilyRL5-like8096352 3001709 SCOP2B (2022-06-29)
CB [auth o]SCOP2B SuperfamilyL35p-like8035388 3000790 SCOP2B (2022-06-29)
DB [auth p]SCOP2B SuperfamilyRibosomal protein L68035397 3000724 SCOP2B (2022-06-29)
DB [auth p]SCOP2B SuperfamilyRibosomal protein L68035398 3000724 SCOP2B (2022-06-29)
EB [auth q]SCOP2B SuperfamilyRibosomal protein L368035391 3001346 SCOP2B (2022-06-29)
FB [auth r]SCOP2B SuperfamilyL9 N-domain-like8032960 3000338 SCOP2B (2022-06-29)
FB [auth r]SCOP2B SuperfamilyRibosomal protein L9 C-domain8032958 3000329 SCOP2B (2022-06-29)
GB [auth s]SCOP2B SuperfamilyRibosomal protein L138096350 3001134 SCOP2B (2022-06-29)
HB [auth t]SCOP2B Superfamily50S Ribosomal protein L14-like8103358 3000433 SCOP2B (2022-06-29)
IB [auth u]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8070553 3001045 SCOP2B (2022-06-29)
JB [auth v]SCOP2B SuperfamilyRibosomal protein L16p/L10e8096366 3000884 SCOP2B (2022-06-29)
KB [auth w]SCOP2B SuperfamilyProkaryotic ribosomal protein L178035409 3000995 SCOP2B (2022-06-29)
MB [auth y]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8096364 3000334 SCOP2B (2022-06-29)
NB [auth z]SCOP2B SuperfamilyRibosomal protein L208096382 3000563 SCOP2B (2022-06-29)
A [auth 0]SCOP2B Superfamilyl21p-like8096354 3002005 SCOP2B (2022-06-29)
L [auth AB]SCOP2B SuperfamilyN-utilization substance G protein NusG N-terminal domain8080353 3000474 SCOP2B (2022-06-29)
M [auth AC]SCOP2B SuperfamilyRBP11-like subunits of RNA polymerase8035907 3001655 SCOP2B (2022-06-29)
M [auth AC]SCOP2B SuperfamilyInsert subdomain of RNA polymerase alpha subunit8037279 3001500 SCOP2B (2022-06-29)
M [auth AC]SCOP2B SuperfamilyRBP11-like subunits of RNA polymerase8035907 3001655 SCOP2B (2022-06-29)
N [auth AD]SCOP2B SuperfamilyRBP11-like subunits of RNA polymerase8035907 3001655 SCOP2B (2022-06-29)
N [auth AD]SCOP2B SuperfamilyInsert subdomain of RNA polymerase alpha subunit8037279 3001500 SCOP2B (2022-06-29)
N [auth AD]SCOP2B SuperfamilyRBP11-like subunits of RNA polymerase8035907 3001655 SCOP2B (2022-06-29)
T [auth F]SCOP2B SuperfamilyRibosomal protein S218053090 3002159 SCOP2B (2022-06-29)
U [auth G]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like8063838 3001397 SCOP2B (2022-06-29)
B [auth 1]SCOP2B SuperfamilyRibosomal protein L228096336 3001078 SCOP2B (2022-06-29)
X [auth J]SCOP2B SuperfamilyAlpha-L RNA-binding motif8083400 3001473 SCOP2B (2022-06-29)
C [auth 2]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8035415 3000210 SCOP2B (2022-06-29)
GA [auth S]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8052568 3000068 SCOP2B (2022-06-29)
IA [auth U]SCOP2B SuperfamilyRibosomal protein S168106547 3000680 SCOP2B (2022-06-29)
D [auth 3]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8096358 3000334 SCOP2B (2022-06-29)
WA [auth i]SCOP2B SuperfamilyZn-binding ribosomal proteins8096380 3001320 SCOP2B (2022-06-29)
E [auth 4]SCOP2B SuperfamilyRibosomal protein L25-like8042538 3001161 SCOP2B (2022-06-29)
LB [auth x]SCOP2B SuperfamilyTranslational machinery components8032969 3000571 SCOP2B (2022-06-29)
I [auth 9]SCOP2B SuperfamilyRibosomal protein L10-like8079773 3000665 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Y [auth K]Ribosomal_S5_Ce6xijK2 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S5_CECOD (1.6)
Y [auth K]Ribosomal_S5e6xijK1 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: Ribosomal_S5ECOD (1.6)
Z [auth L]Ribosomal_S6e6xijL1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S6 (From Topology)T: Ribosomal protein S6F: Ribosomal_S6ECOD (1.6)
AA [auth M]Ribosomal_S7_1e6xijM1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: Ribosomal_S7_1ECOD (1.6)
BA [auth N]Ribosomal_S8_Ne6xijN2 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: Ribosomal_S8_NECOD (1.6)
BA [auth N]Ribosomal_S8_Ce6xijN1 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: Ribosomal_S8_CECOD (1.6)
CA [auth O]Ribosomal_S9e6xijO1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S9ECOD (1.6)
DA [auth P]Ribosomal_S10e6xijP1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: Ribosomal_S10ECOD (1.6)
EA [auth Q]Ribosomal_S11e6xijQ1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_S11ECOD (1.6)
FA [auth R]Ribosom_S12_S23e6xijR1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosom_S12_S23ECOD (1.6)
HA [auth T]Ribosomal_S15_1e6xijT1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: Ribosomal_S15_1ECOD (1.6)
JA [auth V]Ribosomal_S17_1e6xijV1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S17_1ECOD (1.6)
KA [auth W]Ribosomal_S19e6xijW1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: Ribosomal_S19ECOD (1.6)
LA [auth X]Ribosomal_S13_1e6xijX1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: Ribosomal_S13_1ECOD (1.6)
MA [auth Y]Ribosomal_L11e6xijY1 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: Ribosomal_L11ECOD (1.6)
MA [auth Y]Ribosomal_L11_Ne6xijY2 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: Ribosomal_L11_NECOD (1.6)
NA [auth Z]EUF08186e6xijZ1 A: alpha duplicates or obligate multimersX: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)T: Ribosomal protein L7/12, oligomerisation (N-terminal) domainF: EUF08186ECOD (1.6)
PA [auth b]Ribosomal_L27e6xijb1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: Ribosomal_L27ECOD (1.6)
QA [auth c]Ribosomal_L28e6xijc1 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Ribosomal protein L28F: Ribosomal_L28ECOD (1.6)
SA [auth e]Ribosomal_L29e6xije1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: Ribosomal_L29ECOD (1.6)
TA [auth f]Ribosomal_L30e6xijf1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: Ribosomal_L30ECOD (1.6)
UA [auth g]Ribosomal_L31e6xijg1 A: few secondary structure elementsX: Ribosomal protein L31p (From Topology)H: Ribosomal protein L31p (From Topology)T: Ribosomal protein L31pF: Ribosomal_L31ECOD (1.6)
VA [auth h]Ribosomal_L2_1e6xijh2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_L2_1ECOD (1.6)
VA [auth h]Ribosomal_L2_Ce6xijh1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L2_CECOD (1.6)
XA [auth j]Ribosomal_L3e6xijj1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)
YA [auth k]Ribosomal_L33e6xijk1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L33ECOD (1.6)
ZA [auth l]Ribosomal_L4e6xijl1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
AB [auth m]Ribosomal_L34e6xijm1 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: Ribosomal_L34ECOD (1.6)
BB [auth n]Ribosomal_L5_Ce6xijn1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: Ribosomal_L5_CECOD (1.6)
CB [auth o]Ribosomal_L35pe6xijo1 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: Ribosomal_L35pECOD (1.6)
DB [auth p]Ribosomal_L6e6xijp2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6ECOD (1.6)
DB [auth p]Ribosomal_L6_1e6xijp1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6_1ECOD (1.6)
EB [auth q]Ribosomal_L36e6xijq1 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: Ribosomal_L36ECOD (1.6)
FB [auth r]Ribosomal_L9_Ne6xijr1 A: a+b two layersX: L9 N-domain-likeH: L9 N-domain-like (From Topology)T: L9 N-domain-likeF: Ribosomal_L9_NECOD (1.6)
FB [auth r]Ribosomal_L9_C_1e6xijr2 A: a+b two layersX: Ribosomal protein L9 C-domain (From Topology)H: Ribosomal protein L9 C-domain (From Topology)T: Ribosomal protein L9 C-domainF: Ribosomal_L9_C_1ECOD (1.6)
GB [auth s]Ribosomal_L13e6xijs1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
HB [auth t]Ribosomal_L14e6xijt1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
IB [auth u]Ribosomal_L27Ae6xiju1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L27AECOD (1.6)
JB [auth v]Ribosomal_L16e6xijv1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: Ribosomal_L16ECOD (1.6)
KB [auth w]Ribosomal_L17_1e6xijw1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: Ribosomal_L17_1ECOD (1.6)
MB [auth y]Ribosomal_L19e6xijy1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L19ECOD (1.6)
NB [auth z]Ribosomal_L20e6xijz1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: Ribosomal_L20ECOD (1.6)
A [auth 0]Ribosomal_L21pe6xij01 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: Ribosomal_L21pECOD (1.6)
K [auth AA]RNA_pol_Rpb2_6_3rde6xijAA9 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: double psiF: RNA_pol_Rpb2_6_3rdECOD (1.6)
K [auth AA]PRK09603e6xijAA7 A: a+b two layersX: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase (From Topology)H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase (From Topology)T: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseF: PRK09603ECOD (1.6)
K [auth AA]RNA_pol_Rpb2_6_2nde6xijAA6 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Single hybrid motifF: RNA_pol_Rpb2_6_2ndECOD (1.6)
K [auth AA]RNA_pol_Rpb2_6_1ste6xijAA10 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Single hybrid motifF: RNA_pol_Rpb2_6_1stECOD (1.6)
K [auth AA]RNA_pol_Rpb2_6_2nd_2e6xijAA8 A: a+b complex topologyX: Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit (From Topology)H: Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit (From Topology)T: Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunitF: RNA_pol_Rpb2_6_2nd_2ECOD (1.6)
K [auth AA]RNA_pol_Rpb2_3e6xijAA4 A: a+b complex topologyX: N-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology)H: N-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology)T: N-terminal domain in beta subunit of DNA dependent RNA-polymeraseF: RNA_pol_Rpb2_3ECOD (1.6)
K [auth AA]RNA_pol_Rpb2_1e6xijAA3 A: a+b complex topologyX: insertion domain in beta subunit of DNA dependent RNA-polymerase (From Topology)H: insertion domain in beta subunit of DNA dependent RNA-polymerase (From Topology)T: insertion domain in beta subunit of DNA dependent RNA-polymeraseF: RNA_pol_Rpb2_1ECOD (1.6)
K [auth AA]RNA_pol_Rpb2_45e6xijAA2 A: a+b complex topologyX: barrel domain in beta subunit of DNA dependent RNA-polymerase (From Topology)H: barrel domain in beta subunit of DNA dependent RNA-polymerase (From Topology)T: barrel domain in beta subunit of DNA dependent RNA-polymeraseF: RNA_pol_Rpb2_45ECOD (1.6)
K [auth AA]RNA_pol_Rpb2_7e6xijAA5 A: a+b complex topologyX: C-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology)H: C-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology)T: C-terminal domain in beta subunit of DNA dependent RNA-polymeraseF: RNA_pol_Rpb2_7ECOD (1.6)
L [auth AB]NusGe6xijAB1 A: a+b two layersX: Alpha-beta plaitsH: N-utilization substance G protein NusG, N-terminal domain (From Topology)T: N-utilization substance G protein NusG, N-terminal domainF: NusGECOD (1.6)
M [auth AC]RNA_pol_Le6xijAC2 A: a+b two layersX: DCoH-likeH: RBP11-like subunits of RNA polymerase (From Topology)T: RBP11-like subunits of RNA polymeraseF: RNA_pol_LECOD (1.6)
M [auth AC]RNA_pol_A_bace6xijAC1 A: a+b complex topologyX: Ribosomal protein TL5/L25 C-terminal domain-likeH: Insert subdomain of RNA polymerase alpha subunit (From Topology)T: Insert subdomain of RNA polymerase alpha subunitF: RNA_pol_A_bacECOD (1.6)
N [auth AD]RNA_pol_Le6xijAD1 A: a+b two layersX: DCoH-likeH: RBP11-like subunits of RNA polymerase (From Topology)T: RBP11-like subunits of RNA polymeraseF: RNA_pol_LECOD (1.6)
N [auth AD]RNA_pol_A_bace6xijAD2 A: a+b complex topologyX: Ribosomal protein TL5/L25 C-terminal domain-likeH: Insert subdomain of RNA polymerase alpha subunit (From Topology)T: Insert subdomain of RNA polymerase alpha subunitF: RNA_pol_A_bacECOD (1.6)
O [auth AE]RNA_pol_Rpb1_2e6xijAE7 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: double psiF: RNA_pol_Rpb1_2ECOD (1.6)
O [auth AE]PRK00566_2nde6xijAE8 A: a+b two layersX: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase (From Topology)H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase (From Topology)T: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseF: PRK00566_2ndECOD (1.6)
O [auth AE]PRK14844e6xijAE5 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Single hybrid motifF: PRK14844ECOD (1.6)
O [auth AE]RNA_pol_Rpb1_5_1ste6xijAE1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Single hybrid motifF: RNA_pol_Rpb1_5_1stECOD (1.6)
O [auth AE]PRK00566_3rd,RNA_pol_Rpb1_5_3rde6xijAE3 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Single hybrid motifF: PRK00566_3rd,RNA_pol_Rpb1_5_3rdECOD (1.6)
O [auth AE]RNA_pol_Rpb1_1e6xijAE9 A: a+b complex topologyX: N-terminal domain in RNA-polymerase beta-prime subunit (From Topology)H: N-terminal domain in RNA-polymerase beta-prime subunit (From Topology)T: N-terminal domain in RNA-polymerase beta-prime subunitF: RNA_pol_Rpb1_1ECOD (1.6)
O [auth AE]RNA_pol_Rpb1_5_3rde6xijAE2 A: a+b complex topologyX: central helical domain in RNA-polymerase beta-prime subunit (From Topology)H: central helical domain in RNA-polymerase beta-prime subunit (From Topology)T: central helical domain in RNA-polymerase beta-prime subunitF: RNA_pol_Rpb1_5_3rdECOD (1.6)
O [auth AE]RNA_pol_Rpb1_4e6xijAE4 A: a+b complex topologyX: second helical domain in RNA-polymerase beta-prime subunit (From Topology)H: second helical domain in RNA-polymerase beta-prime subunit (From Topology)T: second helical domain in RNA-polymerase beta-prime subunitF: RNA_pol_Rpb1_4ECOD (1.6)
O [auth AE]RNA_pol_Rpb1_3e6xijAE6 A: a+b complex topologyX: first helical domain in RNA-polymerase beta-prime subunit (From Topology)H: first helical domain in RNA-polymerase beta-prime subunit (From Topology)T: first helical domain in RNA-polymerase beta-prime subunitF: RNA_pol_Rpb1_3ECOD (1.6)
Q [auth C]Ribosomal_S18e6xijC1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: Ribosomal_S18ECOD (1.6)
S [auth E]Ribosomal_S20pe6xijE1 A: alpha bundlesX: Spectrin repeat-likeH: Ribosomal protein S20 (From Topology)T: Ribosomal protein S20F: Ribosomal_S20pECOD (1.6)
T [auth F]Ribosomal_S21e6xijF1 A: extended segmentsX: 30S ribosomal protein S21 (From Topology)H: 30S ribosomal protein S21 (From Topology)T: 30S ribosomal protein S21F: Ribosomal_S21ECOD (1.6)
U [auth G]Ribosomal_S2e6xijG1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: Ribosomal_S2ECOD (1.6)
B [auth 1]Ribosomal_L22e6xij11 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: Ribosomal_L22ECOD (1.6)
V [auth H]S1_1e6xijH3 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: S1_1ECOD (1.6)
W [auth I]Ribosomal_S3_Ce6xijI1 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: Ribosomal_S3_CECOD (1.6)
W [auth I]KH_2_1e6xijI2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: KH_2_1ECOD (1.6)
X [auth J]S4e6xijJ1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: S4ECOD (1.6)
C [auth 2]Ribosomal_L23_2e6xij21 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L23_2ECOD (1.6)
GA [auth S]Ribosomal_S14_1e6xijS1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S14_1ECOD (1.6)
IA [auth U]Ribosomal_S16e6xijU1 A: a+b two layersX: Ribosomal protein S16 (From Topology)H: Ribosomal protein S16 (From Topology)T: Ribosomal protein S16F: Ribosomal_S16ECOD (1.6)
D [auth 3]ribosomal_L24_1e6xij31 A: beta barrelsX: SH3H: SH3T: SH3F: ribosomal_L24_1ECOD (1.6)
WA [auth i]Ribosomal_L32pe6xiji1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L32pECOD (1.6)
E [auth 4]Ribosomal_L25pe6xij41 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: Ribosomal_L25pECOD (1.6)
LB [auth x]Ribosomal_L18pe6xijx1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_L18pECOD (1.6)
I [auth 9]Ribosomal_L10e6xij91 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein L10-like (From Topology)T: Ribosomal protein L10-likeF: Ribosomal_L10ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
Y [auth K]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
Y [auth K]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
Z [auth L]PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6- Domain
AA [auth M]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
BA [auth N]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
CA [auth O]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
DA [auth P]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
EA [auth Q]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
FA [auth R]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
HA [auth T]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
JA [auth V]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
KA [auth W]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
LA [auth X]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
MA [auth Y]PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.Domain
MA [auth Y]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domain- Domain
NA [auth Z]PF16320Ribosomal protein L7/L12 dimerisation domain (Ribosomal_L12_N)Ribosomal protein L7/L12 dimerisation domainThis is the N-terminal dimerisation domain of ribosomal protein L7/L12 [1].Domain
PA [auth b]PF01016Ribosomal L27 protein (Ribosomal_L27)Ribosomal L27 protein- Family
QA [auth c]PF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
SA [auth e]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
TA [auth f]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
UA [auth g]PF01197Ribosomal protein L31 (Ribosomal_L31)Ribosomal protein L31- Family
VA [auth h]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
VA [auth h]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
XA [auth j]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
YA [auth k]PF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family
ZA [auth l]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
AB [auth m]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
BB [auth n]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
BB [auth n]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
CB [auth o]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
DB [auth p]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
EB [auth q]PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36- Domain
FB [auth r]PF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domain- Domain
FB [auth r]PF03948Ribosomal protein L9, C-terminal domain (Ribosomal_L9_C)Ribosomal protein L9, C-terminal domain- Domain
GB [auth s]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
HB [auth t]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
IB [auth u]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
JB [auth v]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
KB [auth w]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
MB [auth y]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
NB [auth z]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
A [auth 0]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
K [auth AA]PF04561RNA polymerase Rpb2, domain 2 (RNA_pol_Rpb2_2)RNA polymerase Rpb2, domain 2RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Rpb2 is the second largest subunit of the RNA po ...RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Rpb2 is the second largest subunit of the RNA polymerase. This domain forms one of the two distinctive lobes of the Rpb2 structure. This domain is also known as the lobe domain [1]. DNA has been demonstrated to bind to the concave surface of the lobe domain, and plays a role in maintaining the transcription bubble [1]. Many of the bacterial members contain large insertions within this domain, as region known as dispensable region 1 (DRI).
Domain
K [auth AA]PF10385RNA polymerase beta subunit external 1 domain (RNA_pol_Rpb2_45)RNA polymerase beta subunit external 1 domainRNA polymerases catalyse the DNA-dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared with three in eukaryotes (not including mitochondrial or chloroplast polymerases). This domain in prokaryotes spans the gap between ...RNA polymerases catalyse the DNA-dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared with three in eukaryotes (not including mitochondrial or chloroplast polymerases). This domain in prokaryotes spans the gap between domains 4 and 5 of the yeast protein. It is also known as the external 1 region of the polymerase and is bound in association with the external 2 region [1].
Domain
K [auth AA]PF04560RNA polymerase Rpb2, domain 7 (RNA_pol_Rpb2_7)RNA polymerase Rpb2, domain 7RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Rpb2 is the second largest subunit of the RNA p ...RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Rpb2 is the second largest subunit of the RNA polymerase. This domain comprised of the structural domains anchor and clamp [1]. The clamp region (C-terminal) contains a zinc-binding motif [1]. The clamp region is named due to its interaction with the clamp domain found in Rpb1. The domain also contains a region termed "switch 4". The switches within the polymerase are thought to signal different stages of transcription [1].
Domain
K [auth AA]PF04565RNA polymerase Rpb2, domain 3 (RNA_pol_Rpb2_3)RNA polymerase Rpb2, domain 3RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 3, s also known as the fork domain and is ...RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 3, s also known as the fork domain and is proximal to catalytic site [1].
Domain
K [auth AA]PF04563RNA polymerase beta subunit (RNA_pol_Rpb2_1)RNA polymerase beta subunit- Family
K [auth AA]PF00562RNA polymerase Rpb2, domain 6 (RNA_pol_Rpb2_6)RNA polymerase Rpb2, domain 6RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain represents the hybrid binding domain ...RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain represents the hybrid binding domain and the wall domain [1]. The hybrid binding domain binds the nascent RNA strand / template DNA strand in the Pol II transcription elongation complex. This domain contains the important structural motifs, switch 3 and the flap loop and binds an active site metal ion[1]. This domain is also involved in binding to Rpb1 and Rpb3 [1]. Many of the bacterial members contain large insertions within this domain, as region known as dispensable region 2 (DRII).
Domain
L [auth AB]PF02357Transcription termination factor nusG (NusG)Transcription termination factor nusG- Domain
M [auth AC],
N [auth AD]
PF01193RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L)RNA polymerase Rpb3/Rpb11 dimerisation domainThe two eukaryotic subunits Rpb3 and Rpb11 dimerise to from a platform onto which the other subunits of the RNA polymerase assemble (D/L in archaea). The prokaryotic equivalent of the Rpb3/Rpb11 platform is the alpha-alpha dimer. The dimerisation do ...The two eukaryotic subunits Rpb3 and Rpb11 dimerise to from a platform onto which the other subunits of the RNA polymerase assemble (D/L in archaea). The prokaryotic equivalent of the Rpb3/Rpb11 platform is the alpha-alpha dimer. The dimerisation domain of the alpha subunit/Rpb3 is interrupted by an insert domain (Pfam:PF01000). Some of the alpha subunits also contain iron-sulphur binding domains (Pfam:PF00037). Rpb11 is found as a continuous domain. Members of this family include: alpha subunit from eubacteria, alpha subunits from chloroplasts, Rpb3 subunits from eukaryotes, Rpb11 subunits from eukaryotes, RpoD subunits from archaeal spp, and RpoL subunits from archaeal spp.
Domain
M [auth AC],
N [auth AD]
PF01000RNA polymerase Rpb3/RpoA insert domain (RNA_pol_A_bac)RNA polymerase Rpb3/RpoA insert domainMembers of this family include: alpha subunit from eubacteria alpha subunits from chloroplasts Rpb3 subunits from eukaryotes RpoD subunits from archaealDomain
O [auth AE]PF00623RNA polymerase Rpb1, domain 2 (RNA_pol_Rpb1_2)RNA polymerase Rpb1, domain 2RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 2, contains the active site ...RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 2, contains the active site. The invariant motif -NADFDGD- binds the active site magnesium ion [1,2].
Domain
O [auth AE]PF05000RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4)RNA polymerase Rpb1, domain 4RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 4, represents the funnel do ...RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 4, represents the funnel domain. The funnel contain the binding site for some elongation factors [1,2].
Domain
O [auth AE]PF04983RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3)RNA polymerase Rpb1, domain 3RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 3, represents the pore doma ...RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 3, represents the pore domain. The 3' end of RNA is positioned close to this domain. The pore delimited by this domain is thought to act as a channel through which nucleotides enter the active site and/or where the 3' end of the RNA may be extruded during back-tracking [1,2].
Domain
O [auth AE]PF04998RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5)RNA polymerase Rpb1, domain 5RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 5, represents the discontin ...RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 5, represents the discontinuous cleft domain that is required to from the central cleft or channel where the DNA is bound [1,2].
Domain
O [auth AE]PF04997RNA polymerase Rpb1, domain 1 (RNA_pol_Rpb1_1)RNA polymerase Rpb1, domain 1RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 1, represents the clamp do ...RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 1, represents the clamp domain, which a mobile domain involved in positioning the DNA, maintenance of the transcription bubble and positioning of the nascent RNA strand [1,2].
Domain
Q [auth C]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
S [auth E]PF01649Ribosomal protein S20 (Ribosomal_S20p)Ribosomal protein S20- Family
T [auth F]PF01165Ribosomal protein S21 (Ribosomal_S21)Ribosomal protein S21- Family
U [auth G]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
B [auth 1]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
V [auth H]PF00575S1 RNA binding domain (S1)S1 RNA binding domainThe S1 domain occurs in a wide range of RNA associated proteins. It is structurally similar to cold shock protein which binds nucleic acids. The S1 domain has an OB-fold structure.Domain
W [auth I]PF07650KH domain (KH_2)KH domain- Domain
W [auth I]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
X [auth J]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
X [auth J]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
C [auth 2]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
GA [auth S]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
IA [auth U]PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
D [auth 3]PF17136Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)Ribosomal proteins 50S L24/mitochondrial 39S L24- Family
D [auth 3]PF00467KOW motif (KOW)KOW motif- Family
WA [auth i]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
E [auth 4]PF01386Ribosomal L25p family (Ribosomal_L25p)Ribosomal L25p familyRibosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress.Domain
LB [auth x]PF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
I [auth 9]PF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Y [auth K]30S ribosomal protein S5
Z [auth L]30S ribosomal protein S6
AA [auth M]30S ribosomal protein S7
BA [auth N]30S ribosomal protein S8
CA [auth O]30S ribosomal protein S9
DA [auth P]30S ribosomal protein S10
EA [auth Q]30S ribosomal protein S11
FA [auth R]30S ribosomal protein S12
HA [auth T]30S ribosomal protein S15
JA [auth V]30S ribosomal protein S17
KA [auth W]30S ribosomal protein S19
LA [auth X]30S ribosomal protein S13
MA [auth Y]50S ribosomal protein L11
NA [auth Z]50S ribosomal protein L7/L12
PA [auth b]50S ribosomal protein L27
QA [auth c]50S ribosomal protein L28
SA [auth e]50S ribosomal protein L29
TA [auth f]50S ribosomal protein L30
UA [auth g]50S ribosomal protein L31
VA [auth h]50S ribosomal protein L2
XA [auth j]50S ribosomal protein L3
YA [auth k]50S ribosomal protein L33
ZA [auth l]50S ribosomal protein L4
AB [auth m]50S ribosomal protein L34
BB [auth n]50S ribosomal protein L5
CB [auth o]50S ribosomal protein L35
DB [auth p]50S ribosomal protein L6
EB [auth q]50S ribosomal protein L36
FB [auth r]50S ribosomal protein L9
GB [auth s]50S ribosomal protein L13
HB [auth t]50S ribosomal protein L14
IB [auth u]50S ribosomal protein L15
JB [auth v]50S ribosomal protein L16
KB [auth w]50S ribosomal protein L17
MB [auth y]50S ribosomal protein L19
NB [auth z]50S ribosomal protein L20
A [auth 0]50S ribosomal protein L21
J [auth A],
P [auth B]
E-site and P-site tRNA (fMet)---
K [auth AA]DNA-directed RNA polymerase subunit beta
L [auth AB]Transcription termination/antitermination protein NusG-
M [auth AC],
N [auth AD]
DNA-directed RNA polymerase subunit alpha
O [auth AE]DNA-directed RNA polymerase subunit beta'
Q [auth C]30S ribosomal protein S18
R [auth D]16S rRNA---
S [auth E]30S ribosomal protein S20
T [auth F]30S ribosomal protein S21
U [auth G]30S ribosomal protein S2
B [auth 1]50S ribosomal protein L22
V [auth H]30S ribosomal protein S1
W [auth I]30S ribosomal protein S3
X [auth J]30S ribosomal protein S4
C [auth 2]50S ribosomal protein L23
GA [auth S]30S ribosomal protein S14
IA [auth U]30S ribosomal protein S16
OA [auth a]23S rRNA---
D [auth 3]50S ribosomal protein L24
RA [auth d]5S rRNA---
WA [auth i]50S ribosomal protein L32
E [auth 4]50S ribosomal protein L25
F [auth 5]NT DNA---
LB [auth x]50S ribosomal protein L18
G [auth 6]T DNA---
H [auth 7]mRNA with 24 nt long spacer---
I [auth 9]50S ribosomal protein L10

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
Y [auth K]IPR000851Small ribosomal subunit protein uS5Family
Y [auth K]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
Y [auth K]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
Y [auth K]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
Y [auth K]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
Y [auth K]IPR005712Small ribosomal subunit protein uS5, bacterial-typeFamily
Y [auth K]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
Z [auth L]IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
Z [auth L]IPR000529Small ribosomal subunit protein bS6Family
Z [auth L]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
Z [auth L]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
Z [auth L]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
AA [auth M]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
AA [auth M]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
AA [auth M]IPR000235Small ribosomal subunit protein uS7Family
AA [auth M]IPR005717Small ribosomal subunit protein uS7, bacterial/organellar-typeFamily
AA [auth M]IPR023798Small ribosomal subunit protein uS7 domainDomain
BA [auth N]IPR000630Small ribosomal subunit protein uS8Family
BA [auth N]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
BA [auth N]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
CA [auth O]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
CA [auth O]IPR023035Small ribosomal subunit protein uS9, bacterial/plastidFamily
CA [auth O]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
CA [auth O]IPR000754Small ribosomal subunit protein uS9Family
CA [auth O]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
DA [auth P]IPR027486Small ribosomal subunit protein uS10 domainDomain
DA [auth P]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
DA [auth P]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
DA [auth P]IPR001848Small ribosomal subunit protein uS10Family
EA [auth Q]IPR001971Small ribosomal subunit protein uS11Family
EA [auth Q]IPR019981Small ribosomal subunit protein uS11, bacterial-typeFamily
EA [auth Q]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
EA [auth Q]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
FA [auth R]IPR005679Ribosomal protein uS12, bacterial-typeFamily
FA [auth R]IPR006032Small ribosomal subunit protein uS12Family
FA [auth R]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
HA [auth T]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
HA [auth T]IPR000589Small ribosomal subunit protein uS15Family
HA [auth T]IPR005290Small ribosomal subunit protein uS15, bacterial-typeFamily
JA [auth V]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
JA [auth V]IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
JA [auth V]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
JA [auth V]IPR000266Small ribosomal subunit protein uS17Family
KA [auth W]IPR002222Small ribosomal subunit protein uS19Family
KA [auth W]IPR005732Small ribosomal subunit protein uS19, bacterial-typeFamily
KA [auth W]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
KA [auth W]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
LA [auth X]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
LA [auth X]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
LA [auth X]IPR001892Small ribosomal subunit protein uS13Family
LA [auth X]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
LA [auth X]IPR019980Small ribosomal subunit protein uS13, bacterial-typeFamily
MA [auth Y]IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
MA [auth Y]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
MA [auth Y]IPR000911Ribosomal protein uL11Family
MA [auth Y]IPR006519Large ribosomal subunit protein uL11, bacterial-typeFamily
MA [auth Y]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
MA [auth Y]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
MA [auth Y]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
NA [auth Z]IPR013823Large ribosomal subunit protein bL12, C-terminalDomain
NA [auth Z]IPR008932Large ribosomal subunit protein bL12, oligomerizationDomain
NA [auth Z]IPR036235Large ribosomal subunit protein bL12, oligomerization domain superfamilyHomologous Superfamily
NA [auth Z]IPR014719Ribosomal protein bL12, C-terminal/adaptor protein ClpS-likeHomologous Superfamily
NA [auth Z]IPR000206Large ribosomal subunit protein bL12Family
PA [auth b]IPR001684Large ribosomal subunit protein bL27Family
PA [auth b]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
QA [auth c]IPR001383Large ribosomal subunit protein bL28, bacterial-typeFamily
QA [auth c]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
QA [auth c]IPR026569Large ribosomal subunit protein bL28Family
QA [auth c]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
SA [auth e]IPR001854Large ribosomal subunit protein uL29Family
SA [auth e]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
SA [auth e]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
TA [auth f]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
TA [auth f]IPR005996Large ribosomal subunit protein uL30, bacterial-typeFamily
TA [auth f]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
TA [auth f]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
UA [auth g]IPR002150Large ribosomal subunit protein bL31 type A/BFamily
UA [auth g]IPR027491Large ribosomal subunit protein bL31 type AFamily
UA [auth g]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
UA [auth g]IPR042105Large ribosomal subunit protein bL31 superfamilyHomologous Superfamily
VA [auth h]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
VA [auth h]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
VA [auth h]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
VA [auth h]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
VA [auth h]IPR005880Large ribosomal subunit protein uL2, bacterial/organellar-typeFamily
VA [auth h]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
VA [auth h]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
VA [auth h]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
VA [auth h]IPR002171Large ribosomal subunit protein uL2Family
XA [auth j]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
XA [auth j]IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
XA [auth j]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
XA [auth j]IPR000597Large ribosomal subunit protein uL3Family
YA [auth k]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
YA [auth k]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
YA [auth k]IPR001705Large ribosomal subunit protein bL33Family
YA [auth k]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
ZA [auth l]IPR013005Large ribosomal subunit protein uL4-likeFamily
ZA [auth l]IPR002136Large ribosomal subunit protein uL4Family
ZA [auth l]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
AB [auth m]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
AB [auth m]IPR000271Large ribosomal subunit protein bL34Family
BB [auth n]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
BB [auth n]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
BB [auth n]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
BB [auth n]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
BB [auth n]IPR020930Large ribosomal subunit protein uL5, bacterial-typeFamily
BB [auth n]IPR002132Large ribosomal subunit protein uL5Family
CB [auth o]IPR021137Large ribosomal subunit protein bL35-likeFamily
CB [auth o]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
CB [auth o]IPR001706Large ribosomal subunit protein bL35Family
CB [auth o]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
DB [auth p]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
DB [auth p]IPR019906Large ribosomal subunit protein uL6, bacterial-typeFamily
DB [auth p]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
DB [auth p]IPR000702Large ribosomal subunit protein uL6-likeFamily
DB [auth p]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
EB [auth q]IPR000473Large ribosomal subunit protein bL36Family
EB [auth q]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
FB [auth r]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
FB [auth r]IPR020069Large ribosomal subunit protein bL9, C-terminalDomain
FB [auth r]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
FB [auth r]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
FB [auth r]IPR020594Large ribosomal subunit protein bL9, bacteria/chloroplastFamily
FB [auth r]IPR036791Large ribosomal subunit protein bL9, C-terminal domain superfamilyHomologous Superfamily
FB [auth r]IPR000244Large ribosomal subunit protein bL9Family
GB [auth s]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
GB [auth s]IPR005822Large ribosomal subunit protein uL13Family
GB [auth s]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
GB [auth s]IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily
HB [auth t]IPR005745Large ribosomal subunit protein uL14, bacterial-typeFamily
HB [auth t]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
HB [auth t]IPR000218Large ribosomal subunit protein uL14Family
HB [auth t]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
IB [auth u]IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
IB [auth u]IPR021131Large ribosomal subunit protein uL15/eL18Domain
IB [auth u]IPR030878Large ribosomal subunit protein uL15Family
IB [auth u]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
IB [auth u]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
JB [auth v]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
JB [auth v]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
JB [auth v]IPR000114Large ribosomal subunit protein uL16, bacterial-typeFamily
JB [auth v]IPR016180Large ribosomal subunit protein uL16 domainDomain
JB [auth v]IPR047873Large ribosomal subunit protein uL16Family
KB [auth w]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
KB [auth w]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
KB [auth w]IPR000456Large ribosomal subunit protein bL17Family
MB [auth y]IPR001857Large ribosomal subunit protein bL19Family
MB [auth y]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
MB [auth y]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
MB [auth y]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
NB [auth z]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
NB [auth z]IPR005813Large ribosomal subunit protein bL20Family
A [auth 0]IPR028909Large ribosomal subunit protein bL21-likeFamily
A [auth 0]IPR001787Large ribosomal subunit protein bL21Family
A [auth 0]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
A [auth 0]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
K [auth AA]IPR007120DNA-directed RNA polymerase, subunit 2, hybrid-binding domainDomain
K [auth AA]IPR007121RNA polymerase, beta subunit, conserved siteConserved Site
K [auth AA]IPR014724RNA polymerase Rpb2, OB-foldHomologous Superfamily
K [auth AA]IPR007642RNA polymerase Rpb2, domain 2Domain
K [auth AA]IPR015712DNA-directed RNA polymerase, subunit 2Family
K [auth AA]IPR037033DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamilyHomologous Superfamily
K [auth AA]IPR042107DNA-directed RNA polymerase, beta subunit, external 1 domain superfamilyHomologous Superfamily
K [auth AA]IPR037034RNA polymerase Rpb2, domain 2 superfamilyHomologous Superfamily
K [auth AA]IPR007645RNA polymerase Rpb2, domain 3Domain
K [auth AA]IPR019462DNA-directed RNA polymerase, beta subunit, external 1 domainDomain
K [auth AA]IPR010243DNA-directed RNA polymerase beta subunit, bacterial-typeFamily
K [auth AA]IPR007644RNA polymerase, beta subunit, protrusionDomain
K [auth AA]IPR007641RNA polymerase Rpb2, domain 7Domain
L [auth AB]IPR043425NusG-likeFamily
L [auth AB]IPR001062Transcription antitermination protein, NusGFamily
L [auth AB]IPR036735NusG, N-terminal domain superfamilyHomologous Superfamily
L [auth AB]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
L [auth AB]IPR015869Transcription antitermination protein, NusG, bacteria, conserved siteConserved Site
L [auth AB]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
L [auth AB]IPR047050NusG, N-terminalDomain
L [auth AB]IPR005824KOWDomain
L [auth AB]IPR006645NusG-like, N-terminalDomain
M [auth AC],
N [auth AD]
IPR011773DNA-directed RNA polymerase, alpha subunitFamily
M [auth AC],
N [auth AD]
IPR011260RNA polymerase, alpha subunit, C-terminalDomain
M [auth AC],
N [auth AD]
IPR011263DNA-directed RNA polymerase, RpoA/D/Rpb3-typeDomain
M [auth AC],
N [auth AD]
IPR036603RNA polymerase, RBP11-like subunitHomologous Superfamily
M [auth AC],
N [auth AD]
IPR011262DNA-directed RNA polymerase, insert domainDomain
M [auth AC],
N [auth AD]
IPR036643DNA-directed RNA polymerase, insert domain superfamilyHomologous Superfamily
O [auth AE]IPR007081RNA polymerase Rpb1, domain 5Domain
O [auth AE]IPR045867DNA-directed RNA polymerase, subunit beta-primeFamily
O [auth AE]IPR007083RNA polymerase Rpb1, domain 4Domain
O [auth AE]IPR044893RNA polymerase Rpb1, clamp domain superfamilyHomologous Superfamily
O [auth AE]IPR006592RNA polymerase, N-terminalDomain
O [auth AE]IPR007066RNA polymerase Rpb1, domain 3Domain
O [auth AE]IPR012754DNA-directed RNA polymerase, subunit beta-prime, bacterial typeFamily
O [auth AE]IPR042102RNA polymerase Rpb1, domain 3 superfamilyHomologous Superfamily
O [auth AE]IPR000722RNA polymerase, alpha subunitDomain
O [auth AE]IPR038120RNA polymerase Rpb1, funnel domain superfamilyHomologous Superfamily
O [auth AE]IPR007080RNA polymerase Rpb1, domain 1Domain
Q [auth C]IPR001648Small ribosomal subunit protein bS18Family
Q [auth C]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
Q [auth C]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
S [auth E]IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
S [auth E]IPR002583Small ribosomal subunit protein bS20Family
T [auth F]IPR038380Small ribosomal subunit protein bS21 superfamilyHomologous Superfamily
T [auth F]IPR018278Small ribosomal subunit protein bS21, conserved siteConserved Site
T [auth F]IPR001911Small ribosomal subunit protein bS21Family
U [auth G]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
U [auth G]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
U [auth G]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
U [auth G]IPR001865Small ribosomal subunit protein uS2Family
B [auth 1]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
B [auth 1]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
B [auth 1]IPR001063Large ribosomal subunit protein uL22Family
B [auth 1]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
B [auth 1]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
V [auth H]IPR035104Ribosomal protein S1-likeFamily
V [auth H]IPR003029S1 domainDomain
V [auth H]IPR000110Small ribosomal subunit protein bS1Family
V [auth H]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
W [auth I]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
W [auth I]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
W [auth I]IPR004087K Homology domainDomain
W [auth I]IPR004044K Homology domain, type 2Domain
W [auth I]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
W [auth I]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
W [auth I]IPR005704Small ribosomal subunit protein uS3, bacterial-typeFamily
W [auth I]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
X [auth J]IPR002942RNA-binding S4 domainDomain
X [auth J]IPR005709Small ribosomal subunit protein uS4, bacterial-typeFamily
X [auth J]IPR022801Small ribosomal subunit protein uS4Family
X [auth J]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
X [auth J]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
X [auth J]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
C [auth 2]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
C [auth 2]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
C [auth 2]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
C [auth 2]IPR013025Large ribosomal subunit protein uL23-likeFamily
GA [auth S]IPR001209Small ribosomal subunit protein uS14Family
GA [auth S]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
GA [auth S]IPR023036Small ribosomal subunit protein uS14, bacteria/plastidFamily
IA [auth U]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
IA [auth U]IPR000307Small ribosomal subunit protein bS16Family
IA [auth U]IPR020592Small ribosomal subunit protein bS16, conserved siteConserved Site
D [auth 3]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
D [auth 3]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
D [auth 3]IPR003256Large ribosomal subunit protein uL24Family
D [auth 3]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
D [auth 3]IPR005824KOWDomain
D [auth 3]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
WA [auth i]IPR002677Large ribosomal subunit protein bL32Family
WA [auth i]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
WA [auth i]IPR044957Large ribosomal subunit protein bL32, bacterial typeFamily
E [auth 4]IPR020055Ribosomal protein bL25, short-formFamily
E [auth 4]IPR029751Large ribosomal subunit protein bL25, L25 domainDomain
E [auth 4]IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
E [auth 4]IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
LB [auth x]IPR005484Large ribosomal subunit protein uL18Family
LB [auth x]IPR004389Large ribosomal subunit protein uL18, bacterial-typeFamily
I [auth 9]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
I [auth 9]IPR001790Large ribosomal subunit protein uL10Family
I [auth 9]IPR022973Large ribosomal subunit protein uL10, bacterialFamily
I [auth 9]IPR002363Large ribosomal subunit protein uL10, conserved site, bacteriaConserved Site
I [auth 9]IPR047865Large ribosomal subunit protein uL10, bacterial typeFamily