6WQN

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, contezolid


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8082423 3000334 SCOP2B (2022-06-29)
J [auth K]SCOP2B SuperfamilyRibosomal protein L29 (L29p)8094170 3000713 SCOP2B (2022-06-29)
K [auth L]SCOP2B SuperfamilyTranslational proteins8089152 3000811 SCOP2B (2022-06-29)
L [auth M]SCOP2B SuperfamilyRibosomal protein L30p/L7e8076281 3001378 SCOP2B (2022-06-29)
M [auth N]SCOP2B SuperfamilyZn-binding ribosomal proteins8081583 3001320 SCOP2B (2022-06-29)
N [auth O]SCOP2B SuperfamilyZn-binding ribosomal proteins8075068 3001320 SCOP2B (2022-06-29)
P [auth Q]SCOP2B SuperfamilyL35p-like8083334 3000790 SCOP2B (2022-06-29)
Q [auth R]SCOP2B SuperfamilyRibosomal protein L368083312 3001346 SCOP2B (2022-06-29)
R [auth S]SCOP2B SuperfamilyRibosomal protein L48094174 3001146 SCOP2B (2022-06-29)
S [auth V]SCOP2B SuperfamilyRibosomal protein L138066059 3001134 SCOP2B (2022-06-29)
T [auth W]SCOP2B Superfamily50S Ribosomal protein L14-like8093892 3000433 SCOP2B (2022-06-29)
U [auth X]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8070555 3001045 SCOP2B (2022-06-29)
V [auth Y]SCOP2B SuperfamilyRibosomal protein L16p/L10e8076041 3000884 SCOP2B (2022-06-29)
W [auth Z]SCOP2B SuperfamilyProkaryotic ribosomal protein L178089022 3000995 SCOP2B (2022-06-29)
AA [auth I]SCOP2B SuperfamilyRibosomal L27 protein-like8075030 3000539 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyRibosomal protein L208094941 3000563 SCOP2B (2022-06-29)
DSCOP2B Superfamilyl21p-like8094148 3002005 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyRibosomal protein L228076726 3001078 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8086046 3000210 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8082503 3000334 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ARibosomal_L19e6wqnA1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L19ECOD (1.6)
J [auth K]Ribosomal_L29e6wqnK1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: Ribosomal_L29ECOD (1.6)
K [auth L]Ribosomal_L3e6wqnL1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)
L [auth M]Ribosomal_L30e6wqnM1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: Ribosomal_L30ECOD (1.6)
M [auth N]Ribosomal_L32pe6wqnN1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L32pECOD (1.6)
N [auth O]Ribosomal_L33e6wqnO1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L33ECOD (1.6)
O [auth P]Ribosomal_L34e6wqnP1 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: Ribosomal_L34ECOD (1.6)
P [auth Q]Ribosomal_L35pe6wqnQ1 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: Ribosomal_L35pECOD (1.6)
Q [auth R]Ribosomal_L36e6wqnR1 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: Ribosomal_L36ECOD (1.6)
R [auth S]Ribosomal_L4e6wqnS1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
S [auth V]Ribosomal_L13e6wqnV1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
BRibosomal_L2_1e6wqnB2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_L2_1ECOD (1.6)
BRibosomal_L2_Ce6wqnB1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L2_CECOD (1.6)
T [auth W]Ribosomal_L14e6wqnW1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
U [auth X]Ribosomal_L27Ae6wqnX1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L27AECOD (1.6)
V [auth Y]Ribosomal_L16e6wqnY1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: Ribosomal_L16ECOD (1.6)
W [auth Z]Ribosomal_L17_1e6wqnZ1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: Ribosomal_L17_1ECOD (1.6)
X [auth a]Ribosomal_L18pe6wqna1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_L18pECOD (1.6)
AA [auth I]Ribosomal_L27e6wqnI1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: Ribosomal_L27ECOD (1.6)
CRibosomal_L20e6wqnC1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: Ribosomal_L20ECOD (1.6)
DRibosomal_L21pe6wqnD1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: Ribosomal_L21pECOD (1.6)
ERibosomal_L22e6wqnE1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: Ribosomal_L22ECOD (1.6)
FRibosomal_L23_2e6wqnF1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L23_2ECOD (1.6)
Gribosomal_L24_1e6wqnG1 A: beta barrelsX: SH3H: SH3T: SH3F: ribosomal_L24_1ECOD (1.6)
HRibosomal_L25pe6wqnH1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: Ribosomal_L25pECOD (1.6)
I [auth J]Ribosomal_L28e6wqnJ1 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Ribosomal protein L28F: Ribosomal_L28ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
J [auth K]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
K [auth L]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
L [auth M]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
M [auth N]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
N [auth O]PF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family
O [auth P]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
P [auth Q]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
Q [auth R]PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36- Domain
R [auth S]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
S [auth V]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
T [auth W]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
U [auth X]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
V [auth Y]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
W [auth Z]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
X [auth a]PF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
AA [auth I]PF01016Ribosomal L27 protein (Ribosomal_L27)Ribosomal L27 protein- Family
PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
PF17136Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)Ribosomal proteins 50S L24/mitochondrial 39S L24- Family
PF00467KOW motif (KOW)KOW motif- Family
PF01386Ribosomal L25p family (Ribosomal_L25p)Ribosomal L25p familyRibosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress.Domain
I [auth J]PF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
50S ribosomal protein L19
J [auth K]50S ribosomal protein L29
K [auth L]50S ribosomal protein L3
L [auth M]50S ribosomal protein L30
M [auth N]50S ribosomal protein L32
N [auth O]50S ribosomal protein L33
O [auth P]50S ribosomal protein L34
P [auth Q]50S ribosomal protein L35
Q [auth R]50S ribosomal protein L36
R [auth S]50S ribosomal protein L4
S [auth V]50S ribosomal protein L13
50S ribosomal protein L2
T [auth W]50S ribosomal protein L14
U [auth X]50S ribosomal protein L15
V [auth Y]50S ribosomal protein L16
W [auth Z]50S ribosomal protein L17
X [auth a]50S ribosomal protein L18
Y [auth 1]23S rRNA---
Z [auth 2]5S rRNA---
AA [auth I]50S ribosomal protein L27
50S ribosomal protein L20
50S ribosomal protein L21
50S ribosomal protein L22
50S ribosomal protein L23
50S ribosomal protein L24
50S ribosomal protein L25
I [auth J]50S ribosomal protein L28

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR001857Large ribosomal subunit protein bL19Family
IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
J [auth K]IPR001854Large ribosomal subunit protein uL29Family
J [auth K]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
K [auth L]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
K [auth L]IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
K [auth L]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
K [auth L]IPR000597Large ribosomal subunit protein uL3Family
L [auth M]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
L [auth M]IPR005996Large ribosomal subunit protein uL30, bacterial-typeFamily
L [auth M]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
M [auth N]IPR002677Large ribosomal subunit protein bL32Family
M [auth N]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
M [auth N]IPR044957Large ribosomal subunit protein bL32, bacterial typeFamily
N [auth O]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
N [auth O]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
N [auth O]IPR001705Large ribosomal subunit protein bL33Family
N [auth O]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
O [auth P]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
O [auth P]IPR000271Large ribosomal subunit protein bL34Family
P [auth Q]IPR021137Large ribosomal subunit protein bL35-likeFamily
P [auth Q]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
P [auth Q]IPR001706Large ribosomal subunit protein bL35Family
P [auth Q]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
Q [auth R]IPR000473Large ribosomal subunit protein bL36Family
Q [auth R]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
R [auth S]IPR013005Large ribosomal subunit protein uL4-likeFamily
R [auth S]IPR002136Large ribosomal subunit protein uL4Family
R [auth S]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
S [auth V]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
S [auth V]IPR005822Large ribosomal subunit protein uL13Family
S [auth V]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
S [auth V]IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily
IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
IPR005880Large ribosomal subunit protein uL2, bacterial/organellar-typeFamily
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
IPR002171Large ribosomal subunit protein uL2Family
T [auth W]IPR005745Large ribosomal subunit protein uL14, bacterial-typeFamily
T [auth W]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
T [auth W]IPR000218Large ribosomal subunit protein uL14Family
T [auth W]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
U [auth X]IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
U [auth X]IPR021131Large ribosomal subunit protein uL15/eL18Domain
U [auth X]IPR030878Large ribosomal subunit protein uL15Family
U [auth X]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
U [auth X]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
V [auth Y]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
V [auth Y]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
V [auth Y]IPR000114Large ribosomal subunit protein uL16, bacterial-typeFamily
V [auth Y]IPR016180Large ribosomal subunit protein uL16 domainDomain
V [auth Y]IPR047873Large ribosomal subunit protein uL16Family
W [auth Z]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
W [auth Z]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
W [auth Z]IPR000456Large ribosomal subunit protein bL17Family
X [auth a]IPR005484Large ribosomal subunit protein uL18Family
X [auth a]IPR004389Large ribosomal subunit protein uL18, bacterial-typeFamily
AA [auth I]IPR001684Large ribosomal subunit protein bL27Family
AA [auth I]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
IPR005813Large ribosomal subunit protein bL20Family
IPR028909Large ribosomal subunit protein bL21-likeFamily
IPR001787Large ribosomal subunit protein bL21Family
IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
IPR001063Large ribosomal subunit protein uL22Family
IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
IPR013025Large ribosomal subunit protein uL23-likeFamily
IPR003256Large ribosomal subunit protein uL24Family
IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IPR005824KOWDomain
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
IPR001021Ribosomal protein bL25, long-formFamily
IPR029751Large ribosomal subunit protein bL25, L25 domainDomain
IPR037121Large ribosomal subunit protein bL25, C-terminalHomologous Superfamily
IPR020057Large ribosomal subunit protein bL25, beta domainDomain
IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
I [auth J]IPR001383Large ribosomal subunit protein bL28, bacterial-typeFamily
I [auth J]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
I [auth J]IPR026569Large ribosomal subunit protein bL28Family
I [auth J]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily