6VOC
icosahedral symmetry reconstruction of brome mosaic virus (RNA 3+4)
Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | d6vocb_ | All beta proteins | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | Bromoviridae-like VP | Cucumovirus coat protein | BMV (Brome mosaic virus ) [TaxId: 12302 ], | SCOPe (2.08) |
B [auth C] | d6vocc_ | All beta proteins | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | Bromoviridae-like VP | Cucumovirus coat protein | BMV (Brome mosaic virus ) [TaxId: 12302 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth B] | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8034319 | 3000918 | SCOP2B (2022-06-29) |
B [auth C] | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8034319 | 3000918 | SCOP2B (2022-06-29) |
C [auth A] | SCOP2B Superfamily | Positive stranded ssRNA viruses-like | 8034319 | 3000918 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | Bromo_coat | e6vocB1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Bromo_coat | ECOD (1.6) |
B [auth C] | Bromo_coat | e6vocC1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Bromo_coat | ECOD (1.6) |
C [auth A] | Bromo_coat | e6vocA1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Bromo_coat | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth B] | 2.60.120.220 | Mainly Beta | Sandwich | Jelly Rolls | Satellite virus coat domain | CATH (utative) |
B [auth C] | 2.60.120.220 | Mainly Beta | Sandwich | Jelly Rolls | Satellite virus coat domain | CATH (utative) |
C [auth A] | 2.60.120.220 | Mainly Beta | Sandwich | Jelly Rolls | Satellite virus coat domain | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B], B [auth C], C [auth A] | PF01318 | Bromovirus coat protein (Bromo_coat) | Bromovirus coat protein | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth B], B [auth C], C [auth A] | IPR002009 | Bromovirus coat protein | Family |