Annotations: 6SJF

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth B]	SCOP2B Superfamily	RecA-like P-loop NTPases	8043242	3002019	SCOP2B (2022-06-29)
A [auth B]	SCOP2B Superfamily	RecA-like P-loop NTPases	8043241	3002019	SCOP2B (2022-06-29)
A [auth B]	SCOP2B Superfamily	Restriction endonuclease-like	8043244	3000104	SCOP2B (2022-06-29)
B [auth C]	SCOP2B Superfamily	RecA-like P-loop NTPases	8043245	3002019	SCOP2B (2022-06-29)
B [auth C]	SCOP2B Superfamily	Restriction endonuclease-like	8043247	3000104	SCOP2B (2022-06-29)
B [auth C]	SCOP2B Superfamily	RecA-like P-loop NTPases	8043246	3002019	SCOP2B (2022-06-29)
C [auth D]	SCOP2B Superfamily	RecA-like P-loop NTPases	8043249	3002019	SCOP2B (2022-06-29)
C [auth D]	SCOP2B Superfamily	RecA-like P-loop NTPases	8043248	3002019	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth B]	UvrD-helicase	e6sjfB3	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: UvrD-helicase	ECOD (1.6)
A [auth B]	UvrD_C	e6sjfB2	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: UvrD_C	ECOD (1.6)
A [auth B]	PDDEXK_1	e6sjfB1	A: a/b three-layered sandwiches	X: Restriction endonuclease-like	H: Restriction endonuclease-like (From Topology)	T: Restriction endonuclease-like	F: PDDEXK_1	ECOD (1.6)
B [auth C]	UvrD_C	e6sjfC2	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: UvrD_C	ECOD (1.6)
B [auth C]	Exonuc_V_gamma	e6sjfC3	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Exonuc_V_gamma	ECOD (1.6)
B [auth C]	recC	e6sjfC1	A: a/b three-layered sandwiches	X: Restriction endonuclease-like	H: Restriction endonuclease-like (From Topology)	T: Restriction endonuclease-like	F: recC	ECOD (1.6)
C [auth D]	recD	e6sjfD1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: recD	ECOD (1.6)
C [auth D]	AAA_19	e6sjfD2	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: AAA_19	ECOD (1.6)
C [auth D]	UvrD_C_2	e6sjfD3	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: UvrD_C_2	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A [auth B]	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (utative)
A [auth B]	1.10.3170.10	Mainly Alpha	Orthogonal Bundle	Recbcd, chain B, domain 2	Recbcd, chain B, domain 2	CATH (utative)
A [auth B]	1.10.486.10	Mainly Alpha	Orthogonal Bundle	PCRA	domain 4	CATH (utative)
A [auth B]	3.90.320.10	Alpha Beta	Alpha-Beta Complex	Lambda Exonuclease	Chain A	CATH (utative)
B [auth C]	3.40.50.10930	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (utative)
B [auth C]	1.10.10.160	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A		CATH (utative)
B [auth C]	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (utative)
B [auth C]	1.10.486.10	Mainly Alpha	Orthogonal Bundle	PCRA	domain 4	CATH (utative)
B [auth C]	1.10.10.990	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A		CATH (utative)
C [auth D]	1.10.10.1020	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	RecBCD complex, subunit RecD, N-terminal domain	CATH (utative)
C [auth D]	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth B]	PF13361	UvrD-like helicase C-terminal domain (UvrD_C)	UvrD-like helicase C-terminal domain	This domain is found at the C-terminus of a wide variety of helicase enzymes. This domain has a AAA-like structural fold.	Domain
A [auth B]	PF00580	UvrD/REP helicase N-terminal domain (UvrD-helicase)	UvrD/REP helicase N-terminal domain	The Rep family helicases are composed of four structural domains. The Rep family function as dimers. REP helicases catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. Swiss:P23478, Swiss:P08394 have large insertions near t ...	The Rep family helicases are composed of four structural domains. The Rep family function as dimers. REP helicases catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. Swiss:P23478, Swiss:P08394 have large insertions near to the carboxy-terminus relative to other members of the family.	Domain
B [auth C]	PF04257	Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)	Exodeoxyribonuclease V, gamma subunit	-	Family
B [auth C]	PF17946	RecC C-terminal domain (RecC_C)	RecC C-terminal domain	This entry corresponds to the C-terminal domain of the RecC protein. This domain has a PD(D/E)XK like fold. Deleting this domain eliminates RecD assembly within the RecBCD complex [1].	Domain
C [auth D]	PF13538	UvrD-like helicase C-terminal domain (UvrD_C_2)	UvrD-like helicase C-terminal domain	This domain is found at the C-terminus of a wide variety of helicase enzymes. This domain has a AAA-like structural fold.	Domain
C [auth D]	PF21185	RecBCD enzyme subunit RecD, N-terminal domain (RecD_N)	RecBCD enzyme subunit RecD, N-terminal domain	This domain is found in RecBCD enzyme subunit RecD from Escherichia coli and in similar proteins mostly found in Gammaproteobacteria. RecD is a 5'-3' helicase that comprises three domains. This entry represents the N-terminal domain of RecD, which fo ...	This domain is found in RecBCD enzyme subunit RecD from Escherichia coli and in similar proteins mostly found in Gammaproteobacteria. RecD is a 5'-3' helicase that comprises three domains. This entry represents the N-terminal domain of RecD, which forms the principal interface between RecD and domain 2B of RecC and leads to the conformational change in RecD that has significant effects on the conformation of the RecC subunit [1-4].	Domain
C [auth D]	PF13245	AAA domain (AAA_19)	AAA domain	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth B]	RecBCD enzyme subunit RecB	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding purine nucleotide binding organic cyclic compound binding anion binding cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding DNA binding nucleic acid binding DNA exonuclease activity catalytic activity, acting on a nucleic acid hydrolase activity exodeoxyribonuclease V activity DNA exonuclease activity, producing 5'-phosphomonoesters DNA nuclease activity exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters catalytic activity, acting on DNA nuclease activity hydrolase activity, acting on ester bonds catalytic activity exonuclease activity DNA endonuclease activity endonuclease activity ATP-dependent activity, acting on DNA DNA translocase activity ATP-dependent activity DNA helicase activity helicase activity 3'-5' DNA helicase activity	cellular response to stimulus double-strand break repair response to stimulus DNA recombination primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process organic cyclic compound metabolic process organic substance metabolic process cellular response to stress DNA damage response response to stress recombinational repair cellular response to stimulus double-strand break repair response to stimulus DNA recombination primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process organic cyclic compound metabolic process organic substance metabolic process cellular response to stress DNA damage response response to stress recombinational repair metabolic process cellular process macromolecule metabolic process double-strand break repair via homologous recombination DNA repair response to radiation response to abiotic stimulus biological process involved in interspecies interaction between organisms response to other organism defense response defense response to symbiont response to external stimulus clearance of foreign intracellular DNA clearance of foreign intracellular nucleic acids response to biotic stimulus defense response to other organism response to external biotic stimulus	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol protein-containing complex catalytic complex exodeoxyribonuclease V complex intracellular protein-containing complex
B [auth C]	RecBCD enzyme subunit RecC	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding DNA binding nucleic acid binding DNA exonuclease activity catalytic activity, acting on a nucleic acid hydrolase activity exodeoxyribonuclease V activity DNA exonuclease activity, producing 5'-phosphomonoesters DNA nuclease activity exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters catalytic activity, acting on DNA nuclease activity hydrolase activity, acting on ester bonds catalytic activity exonuclease activity ATP-dependent activity, acting on DNA DNA helicase activity helicase activity ATP-dependent activity	cellular response to stimulus double-strand break repair response to stimulus DNA recombination primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process organic cyclic compound metabolic process organic substance metabolic process cellular response to stress DNA damage response response to stress recombinational repair cellular response to stimulus double-strand break repair response to stimulus DNA recombination primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process organic cyclic compound metabolic process organic substance metabolic process cellular response to stress DNA damage response response to stress recombinational repair metabolic process cellular process macromolecule metabolic process double-strand break repair via homologous recombination DNA repair response to radiation response to abiotic stimulus biological process involved in interspecies interaction between organisms response to other organism defense response defense response to symbiont response to external stimulus clearance of foreign intracellular DNA clearance of foreign intracellular nucleic acids response to biotic stimulus defense response to other organism response to external biotic stimulus	protein-containing complex catalytic complex exodeoxyribonuclease V complex intracellular protein-containing complex
C [auth D]	RecBCD enzyme subunit RecD	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding DNA binding nucleic acid binding catalytic activity, acting on a nucleic acid helicase activity catalytic activity ATP-dependent activity DNA exonuclease activity hydrolase activity exodeoxyribonuclease V activity DNA exonuclease activity, producing 5'-phosphomonoesters DNA nuclease activity exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters catalytic activity, acting on DNA nuclease activity hydrolase activity, acting on ester bonds exonuclease activity pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity, acting on acid anhydrides ATP-dependent activity, acting on DNA DNA helicase activity single-stranded DNA helicase activity	cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process double-strand break repair DNA recombination primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process organic cyclic compound metabolic process organic substance metabolic process cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process double-strand break repair DNA recombination primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process organic cyclic compound metabolic process organic substance metabolic process recombinational repair metabolic process macromolecule metabolic process double-strand break repair via homologous recombination DNA repair	protein-containing complex catalytic complex exodeoxyribonuclease V complex intracellular protein-containing complex
D [auth X]	Forked DNA substrate	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B]	IPR014017	UvrD-like DNA helicase, C-terminal	Domain
A [auth B]	IPR011335	Restriction endonuclease type II-like	Homologous Superfamily
A [auth B]	IPR038726	PD-(D/E)XK endonuclease-like domain, AddAB-type	Domain
A [auth B]	IPR004586	RecBCD enzyme subunit RecB	Family
A [auth B]	IPR011604	PD-(D/E)XK endonuclease-like domain superfamily	Homologous Superfamily
A [auth B]	IPR014016	UvrD-like helicase, ATP-binding domain	Domain
A [auth B]	IPR000212	DNA helicase, UvrD/REP type	Family
A [auth B]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
B [auth C]	IPR011335	Restriction endonuclease type II-like	Homologous Superfamily
B [auth C]	IPR006697	RecBCD enzyme subunit RecC	Family
B [auth C]	IPR041500	RecC, C-terminal	Domain
B [auth C]	IPR013986	DExx box DNA helicase domain superfamily	Homologous Superfamily
B [auth C]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
C [auth D]	IPR006344	RecBCD enzyme subunit RecD	Family
C [auth D]	IPR049550	RecBCD enzyme subunit RecD, N-terminal domain	Domain
C [auth D]	IPR003593	AAA+ ATPase domain	Domain
C [auth D]	IPR027785	UvrD-like helicase C-terminal domain	Domain
C [auth D]	IPR041851	RecBCD enzyme subunit RecD, N-terminal domain superfamily	Homologous Superfamily
C [auth D]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.