6OSU
Crystal Structure of the D-alanyl-D-alanine carboxypeptidase DacD from Francisella tularensis
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PBP5_C | e6osuA4 | A: beta sandwiches | X: Penicillin-binding protein associated domain (From Topology) | H: Penicillin-binding protein associated domain (From Topology) | T: Penicillin-binding protein associated domain | F: PBP5_C | ECOD (1.6) |
A | Peptidase_S11_1st | e6osuA1 | A: alpha complex topology | X: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology) | H: alpha-helical domain in beta-lactamase/transpeptidase-like proteins (From Topology) | T: alpha-helical domain in beta-lactamase/transpeptidase-like proteins | F: Peptidase_S11_1st | ECOD (1.6) |
A | UNK_F_TYPE | e6osuA3 | A: a+b two layers | X: Insertion domain of carboxypeptidase dacD (From Topology) | H: Insertion domain of carboxypeptidase dacD (From Topology) | T: Insertion domain of carboxypeptidase dacD | F: UNK_F_TYPE | ECOD (1.6) |
A | Peptidase_S11_2nd | e6osuA2 | A: a+b three layers | X: Profilin-like | H: a+b domain in beta-lactamase/transpeptidase-like proteins (From Topology) | T: a+b domain in beta-lactamase/transpeptidase-like proteins | F: Peptidase_S11_2nd | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00768 | D-alanyl-D-alanine carboxypeptidase (Peptidase_S11) | D-alanyl-D-alanine carboxypeptidase | - | Domain | |
PF07943 | Penicillin-binding protein 5, C-terminal domain (PBP5_C) | Penicillin-binding protein 5, C-terminal domain | Penicillin-binding protein 5 expressed by E. coli (Swiss:P04287) functions as a D-alanyl-D-alanine carboxypeptidase. It is composed of two domains that are oriented at approximately right angles to each other. The N-terminal domain (Pfam:PF00768) is ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR037167 | D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily | Homologous Superfamily | |
IPR012907 | Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal | Domain | |
IPR018044 | Peptidase S11, D-alanyl-D-alanine carboxypeptidase A | Family | |
IPR012338 | Beta-lactamase/transpeptidase-like | Homologous Superfamily | |
IPR015956 | Penicillin-binding protein, C-terminal domain superfamily | Homologous Superfamily | |
IPR001967 | Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal | Domain |