Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
B [auth 1]SCOP2B SuperfamilyBSD domain-like8039783 3001039 SCOP2B (2022-06-29)
D [auth 3]SCOP2B SuperfamilyRING/U-box like8039298 3000160 SCOP2B (2022-06-29)
E [auth 4]SCOP2B SuperfamilyvWA-like8054198 3000832 SCOP2B (2022-06-29)
F [auth 5]SCOP2B SuperfamilyTFB5-like8034306 3000733 SCOP2B (2022-06-29)
G [auth 6]SCOP2B SuperfamilyvWA-like8057086 3000832 SCOP2B (2022-06-29)
G [auth 6]SCOP2B SuperfamilyCysteine-rich domain8033482 3001452 SCOP2B (2022-06-29)
H [auth 7]SCOP2B SuperfamilyRecA-like P-loop NTPases8054245 3002019 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth 0]PF06733e6o9m01 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF06733ECOD (1.6)
E [auth 4]PF03850e6o9m42 A: a/b three-layered sandwichesX: HAD domain-likeH: HAD domain-relatedT: vWA-likeF: PF03850ECOD (1.6)
E [auth 4]PF03850e6o9m41 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF03850ECOD (1.6)
F [auth 5]PF06331e6o9m51 A: a+b complex topologyX: TFB5-related (From Topology)H: TFB5-related (From Topology)T: TFB5-relatedF: PF06331ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth 0]PF13307Helicase C-terminal domain (Helicase_C_2)Helicase C-terminal domainThis domain is found at the C-terminus of DEAD-box helicases.Domain
A [auth 0]PF06777Helical and beta-bridge domain (HBB)Helical and beta-bridge domainHBB is the domain on DEAD-box eukaryotic DNA repair helicases (EC:3.6.1.-) that appears to be a unique fold. It's conformation is of alpha-helices 12-16 plus a short beta-bridge to the FeS-cluster domain at the N-terminal. The full-length XPD protein ...HBB is the domain on DEAD-box eukaryotic DNA repair helicases (EC:3.6.1.-) that appears to be a unique fold. It's conformation is of alpha-helices 12-16 plus a short beta-bridge to the FeS-cluster domain at the N-terminal. The full-length XPD protein verifies the presence of damage to DNA and allows DNA repair to proceed. XPD is an assembly of several domains to form a doughnut-shaped molecule that is able to separate two DNA strands and scan the DNA for damage. HBB helps to form the overall DNA-clamping architecture [1]. This family represents a conserved region within a number of eukaryotic DNA repair helicases (EC:3.6.1.-).
Domain
A [auth 0]PF06733DEAD_2 (DEAD_2)DEAD_2- Family
B [auth 1]PF03909BSD domain (BSD)BSD domainThis domain contains a distinctive -FW- motif. It is found in a family of eukaryotic transcription factors as well as a set of proteins of unknown function.Domain
C [auth 2]PF03849Transcription factor Tfb2 (Tfb2)Transcription factor Tfb2- Family
C [auth 2]PF18307Transcription factor Tfb2 (p52) C-terminal domain (Tfb2_C)Transcription factor Tfb2 (p52) C-terminal domainThis is the C-terminal domain of Transcription factor Tfb2 present in Saccharomyces cerevisiae. Tfb2 is referred to as p52 in humans. The interaction between p8-Tfb5 and p52-Tfb2 has a key role in the maintenance of the transcription factor TFIIH arc ...This is the C-terminal domain of Transcription factor Tfb2 present in Saccharomyces cerevisiae. Tfb2 is referred to as p52 in humans. The interaction between p8-Tfb5 and p52-Tfb2 has a key role in the maintenance of the transcription factor TFIIH architecture and TFIIHs function in nucleotide-excision repair (NER) pathway. The C-terminal domain of Tfb2 is thought to have a crucial role in DNA repair [1].
Domain
D [auth 3]PF17121Zinc finger, C3HC4 type (RING finger) (zf-C3HC4_5)Zinc finger, C3HC4 type (RING finger)- Domain
D [auth 3]PF06391CDK-activating kinase assembly factor MAT1 (MAT1)CDK-activating kinase assembly factor MAT1- Family
E [auth 4]PF03850Transcription factor Tfb4 (Tfb4)Transcription factor Tfb4This family appears to be distantly related to the VWA domain.Domain
F [auth 5]PF06331Transcription factor TFIIH complex subunit Tfb5 (Tfb5)Transcription factor TFIIH complex subunit Tfb5- Family
G [auth 6]PF04056Ssl1-like (Ssl1)Ssl1-like- Family
G [auth 6]PF07975TFIIH C1-like domain (C1_4)TFIIH C1-like domainThe carboxyl-terminal region of TFIIH is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD ...The carboxyl-terminal region of TFIIH is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C (Pfam:PF00130) [1].
Domain
H [auth 7]PF04851Type III restriction enzyme, res subunit (ResIII)Type III restriction enzyme, res subunit- Family
H [auth 7]PF16203ERCC3/RAD25/XPB C-terminal helicase (ERCC3_RAD25_C)ERCC3/RAD25/XPB C-terminal helicaseThis is the C-terminal helicase domain of ERCC3, RAD25 and XPB helicases [1].Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 0]TFIIH basal transcription factor complex helicase XPD subunit
B [auth 1]General transcription factor IIH subunit 1
C [auth 2]General transcription factor IIH subunit 4, p52
D [auth 3]CDK-activating kinase assembly factor MAT1
E [auth 4]General transcription factor IIH subunit 3
F [auth 5]General transcription factor IIH subunit 5-
G [auth 6]General transcription factor IIH subunit 2
H [auth 7]TFIIH basal transcription factor complex helicase XPB subunit

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth 0]IPR001945RAD3/XPD familyFamily
A [auth 0]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
A [auth 0]IPR006554Helicase-like, DEXD box c2 typeDomain
A [auth 0]IPR010614RAD3-like helicase, DEADDomain
A [auth 0]IPR013020ATP-dependent helicase Rad3/Chl1-likeFamily
A [auth 0]IPR010643Helical and beta-bridge domainDomain
A [auth 0]IPR045028Helicase superfamily 1/2, DinG/Rad3-likeFamily
A [auth 0]IPR002464DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved siteConserved Site
A [auth 0]IPR006555ATP-dependent helicase, C-terminalDomain
A [auth 0]IPR014013Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-typeDomain
B [auth 1]IPR013876TFIIH p62 subunit, N-terminalDomain
B [auth 1]IPR035925BSD domain superfamilyHomologous Superfamily
B [auth 1]IPR027079TFIIH subunit Tfb1/GTF2H1Family
B [auth 1]IPR011993PH-like domain superfamilyHomologous Superfamily
B [auth 1]IPR005607BSD domainDomain
C [auth 2]IPR040662Transcription factor Tfb2, C-terminal domainDomain
C [auth 2]IPR004598Transcription factor TFIIH subunit p52/Tfb2Family
D [auth 3]IPR017907Zinc finger, RING-type, conserved siteConserved Site
D [auth 3]IPR004575Cdk-activating kinase assembly factor MAT1/Tfb3Family
D [auth 3]IPR013083Zinc finger, RING/FYVE/PHD-typeHomologous Superfamily
D [auth 3]IPR015877Cdk-activating kinase assembly factor MAT1, centreDomain
D [auth 3]IPR003903Ubiquitin interacting motifConserved Site
D [auth 3]IPR001841Zinc finger, RING-typeDomain
E [auth 4]IPR004600TFIIH subunit Tfb4/GTF2H3Family
E [auth 4]IPR036465von Willebrand factor A-like domain superfamilyHomologous Superfamily
F [auth 5]IPR009400TFIIH subunit TTDA/Tfb5Family
F [auth 5]IPR035935TFB5-like superfamilyHomologous Superfamily
G [auth 6]IPR007198Ssl1-likeDomain
G [auth 6]IPR012170TFIIH subunit Ssl1/p44Family
G [auth 6]IPR004595TFIIH C1-like domainDomain
G [auth 6]IPR013087Zinc finger C2H2-typeDomain
G [auth 6]IPR036465von Willebrand factor A-like domain superfamilyHomologous Superfamily
G [auth 6]IPR013083Zinc finger, RING/FYVE/PHD-typeHomologous Superfamily
G [auth 6]IPR002035von Willebrand factor, type ADomain
G [auth 6]IPR046349C1-like domain superfamilyHomologous Superfamily
H [auth 7]IPR032830Helicase XPB/Ssl2, N-terminal domainDomain
H [auth 7]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
H [auth 7]IPR006935Helicase/UvrB, N-terminalDomain
H [auth 7]IPR001650Helicase, C-terminal domain-likeDomain
H [auth 7]IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
H [auth 7]IPR032438ERCC3/RAD25/XPB helicase, C-terminal domainDomain
H [auth 7]IPR001161Helicase XPB/Ssl2Family

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A [auth 0]PharosP18074
B [auth 1]PharosP32780
C [auth 2]PharosQ92759
D [auth 3]PharosP51948
E [auth 4]PharosQ13889
F [auth 5]PharosQ6ZYL4
H [auth 7]PharosP19447