6O85

Electron cryo-microscopy of the eukaryotic translation initiation factor 2B bound to eukaryotic translation initiation factor 2 from Homo sapiens


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
GSCOP2B SuperfamilyNagB/RpiA/CoA transferase-like8101599 3000693 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyNagB/RpiA/CoA transferase-like8101599 3000693 SCOP2B (2022-06-29)
K [auth L]SCOP2B SuperfamilyNucleic acid-binding proteins8042151 3000135 SCOP2B (2022-06-29)
K [auth L]SCOP2B SuperfamilyeIF2alpha middle domain-like8042150 3001761 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AHexapep_2_1e6o85A1 A: beta duplicates or obligate multimersX: Single-stranded left-handed beta-helixH: Trimeric LpxA-like enzymes (From Topology)T: Trimeric LpxA-like enzymesF: Hexapep_2_1ECOD (1.6)
ANTP_transferasee6o85A2 A: a/b three-layered sandwichesX: Nucleotide-diphospho-sugar transferases (From Topology)H: Nucleotide-diphospho-sugar transferases (From Topology)T: Nucleotide-diphospho-sugar transferasesF: NTP_transferaseECOD (1.6)
BHexapep_2_1e6o85B3 A: beta duplicates or obligate multimersX: Single-stranded left-handed beta-helixH: Trimeric LpxA-like enzymes (From Topology)T: Trimeric LpxA-like enzymesF: Hexapep_2_1ECOD (1.6)
BW2e6o85B2 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: W2ECOD (1.6)
BNTP_transferasee6o85B1 A: a/b three-layered sandwichesX: Nucleotide-diphospho-sugar transferases (From Topology)H: Nucleotide-diphospho-sugar transferases (From Topology)T: Nucleotide-diphospho-sugar transferasesF: NTP_transferaseECOD (1.6)
CKOG1465e6o85C1 A: alpha bundlesX: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology)H: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology)T: Translation initiation factor eIF-2B delta subunit N-terminal helical domainF: KOG1465ECOD (1.6)
CIF-2B_Ce6o85C2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NagB/RpiA/CoA transferase-likeF: IF-2B_CECOD (1.6)
DKOG1465e6o85D2 A: alpha bundlesX: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology)H: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology)T: Translation initiation factor eIF-2B delta subunit N-terminal helical domainF: KOG1465ECOD (1.6)
DIF-2B_Ce6o85D1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NagB/RpiA/CoA transferase-likeF: IF-2B_CECOD (1.6)
EIF-2B_N_1e6o85E1 A: alpha bundlesX: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology)H: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology)T: Translation initiation factor eIF-2B delta subunit N-terminal helical domainF: IF-2B_N_1ECOD (1.6)
EIF-2B_Ce6o85E2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NagB/RpiA/CoA transferase-likeF: IF-2B_CECOD (1.6)
FIF-2B_N_1e6o85F2 A: alpha bundlesX: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology)H: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology)T: Translation initiation factor eIF-2B delta subunit N-terminal helical domainF: IF-2B_N_1ECOD (1.6)
FIF-2B_Ce6o85F1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NagB/RpiA/CoA transferase-likeF: IF-2B_CECOD (1.6)
GIF-2B_N_1e6o85G2 A: alpha bundlesX: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology)H: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology)T: Translation initiation factor eIF-2B delta subunit N-terminal helical domainF: IF-2B_N_1ECOD (1.6)
GIF-2B_Ce6o85G1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NagB/RpiA/CoA transferase-likeF: IF-2B_CECOD (1.6)
HIF-2B_N_1e6o85H1 A: alpha bundlesX: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology)H: Translation initiation factor eIF-2B delta subunit N-terminal helical domain (From Topology)T: Translation initiation factor eIF-2B delta subunit N-terminal helical domainF: IF-2B_N_1ECOD (1.6)
HIF-2B_Ce6o85H2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NagB/RpiA/CoA transferase-likeF: IF-2B_CECOD (1.6)
INTP_transferasee6o85I1 A: a/b three-layered sandwichesX: Nucleotide-diphospho-sugar transferases (From Topology)H: Nucleotide-diphospho-sugar transferases (From Topology)T: Nucleotide-diphospho-sugar transferasesF: NTP_transferaseECOD (1.6)
JNTP_transferasee6o85J1 A: a/b three-layered sandwichesX: Nucleotide-diphospho-sugar transferases (From Topology)H: Nucleotide-diphospho-sugar transferases (From Topology)T: Nucleotide-diphospho-sugar transferasesF: NTP_transferaseECOD (1.6)
K [auth L]S1_1e6o85L3 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: S1_1ECOD (1.6)
K [auth L]EIF_2_alpha_Ne6o85L2 A: alpha arraysX: HhH/H2THH: eIF2alpha middle domain (From Topology)T: eIF2alpha middle domainF: EIF_2_alpha_NECOD (1.6)
K [auth L]EIF_2_alpha_Ce6o85L1 A: a+b two layersX: Alpha-beta plaitsH: eIF-2-alpha, C-terminal domain (From Topology)T: eIF-2-alpha, C-terminal domainF: EIF_2_alpha_CECOD (1.6)
L [auth S]GTP_EFTU_D2_2e6o85S1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: GTP_EFTU_D2_2ECOD (1.6)
L [auth S]eIF2_Ce6o85S2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Aminomethyltransferase beta-barrel domainF: eIF2_CECOD (1.6)
L [auth S]MnmE_helical_2nde6o85S3 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: MnmE_helical_2ndECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF02020eIF4-gamma/eIF5/eIF2-epsilon (W2)eIF4-gamma/eIF5/eIF2-epsilon- Repeat
C, D
PF01008Initiation factor 2 subunit family (IF-2B)Initiation factor 2 subunit family- Family
E, F
PF01008Initiation factor 2 subunit family (IF-2B)Initiation factor 2 subunit family- Family
G, H
PF01008Initiation factor 2 subunit family (IF-2B)Initiation factor 2 subunit family- Family
K [auth L]PF07541Eukaryotic translation initiation factor 2 alpha subunit (EIF_2_alpha)Eukaryotic translation initiation factor 2 alpha subunit- Family
K [auth L]PF00575S1 RNA binding domain (S1)S1 RNA binding domainThe S1 domain occurs in a wide range of RNA associated proteins. It is structurally similar to cold shock protein which binds nucleic acids. The S1 domain has an OB-fold structure.Domain
L [auth S]PF00009Elongation factor Tu GTP binding domain (GTP_EFTU)Elongation factor Tu GTP binding domainThis domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains.Domain
L [auth S]PF03144Elongation factor Tu domain 2 (GTP_EFTU_D2)Elongation factor Tu domain 2Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as e ...Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as elongation factor G and translation initiation factor IF-2. This domain is structurally related to Pfam:PF03143, and in fact has weak sequence matches to this domain.
Domain
L [auth S]PF09173Initiation factor eIF2 gamma, C terminal (eIF2_C)Initiation factor eIF2 gamma, C terminalMembers of this family, which are found in the initiation factors eIF2 and EF-Tu, adopt a structure consisting of a beta barrel with Greek key topology. They are required for formation of the ternary complex with GTP and initiator tRNA [1].Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
Translation initiation factor eIF-2B subunit epsilon
C, D
Translation initiation factor eIF-2B subunit beta
E, F
Translation initiation factor eIF-2B subunit delta
G, H
Translation initiation factor eIF-2B subunit alpha
I, J
Translation initiation factor eIF-2B subunit gamma
K [auth L]Eukaryotic translation initiation factor 2 subunit 1
L [auth S]Eukaryotic translation initiation factor 2 subunit 3
M [auth d]Eukaryotic translation initiation factor 2 subunit beta---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR044123Translation initiation factor eIF-2B subunit epsilon, W2 domainDomain
A, B
IPR016024Armadillo-type foldHomologous Superfamily
A, B
IPR003307W2 domainDomain
A, B
IPR035543Translation initiation factor eIF-2B subunit epsilon, N-terminalDomain
A, B
IPR011004Trimeric LpxA-like superfamilyHomologous Superfamily
A, B
IPR029044Nucleotide-diphospho-sugar transferasesHomologous Superfamily
C, D
IPR000649Initiation factor 2B-relatedFamily
C, D
IPR042529Initiation factor 2B-like, C-terminalHomologous Superfamily
C, D
IPR037171NagB/RpiA transferase-likeHomologous Superfamily
E, F
IPR000649Initiation factor 2B-relatedFamily
E, F
IPR042529Initiation factor 2B-like, C-terminalHomologous Superfamily
E, F
IPR037171NagB/RpiA transferase-likeHomologous Superfamily
G, H
IPR000649Initiation factor 2B-relatedFamily
G, H
IPR042529Initiation factor 2B-like, C-terminalHomologous Superfamily
G, H
IPR037171NagB/RpiA transferase-likeHomologous Superfamily
G, H
IPR042528Translation initiation factor eIF-2B subunit alpha, N-terminalHomologous Superfamily
I, J
IPR005835Nucleotidyl transferase domainDomain
I, J
IPR029044Nucleotide-diphospho-sugar transferasesHomologous Superfamily
K [auth L]IPR044126IF2a, S1-like domainDomain
K [auth L]IPR024054Translation initiation factor 2, alpha subunit, middle domain superfamilyHomologous Superfamily
K [auth L]IPR024055Translation initiation factor 2, alpha subunit, C-terminalHomologous Superfamily
K [auth L]IPR003029S1 domainDomain
K [auth L]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
K [auth L]IPR011488Translation initiation factor 2, alpha subunitFamily
L [auth S]IPR000795Translational (tr)-type GTP-binding domainDomain
L [auth S]IPR009001Translation elongation factor EF1A/initiation factor IF2gamma, C-terminalHomologous Superfamily
L [auth S]IPR004161Translation elongation factor EFTu-like, domain 2Domain
L [auth S]IPR044128Initiation factor eIF2 gamma, GTP-binding domainDomain
L [auth S]IPR015256Initiation factor eIF2 gamma, C-terminalDomain
L [auth S]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
L [auth S]IPR044127Initiation factor eIF2 gamma, domain 2Domain
L [auth S]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A, B
PharosQ13144
C, D
PharosP49770
E, F
PharosQ9UI10
G, H
PharosQ14232
I, J
PharosQ9NR50
K [auth L]PharosP05198
L [auth S]PharosP41091