Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
JSCOP2B SuperfamilyTrypsin-like serine proteases8071557 3000114 SCOP2B (2022-06-29)
M [auth K]SCOP2B SuperfamilyTrypsin-like serine proteases8071557 3000114 SCOP2B (2022-06-29)
P [auth L]SCOP2B SuperfamilyTrypsin-like serine proteases8071557 3000114 SCOP2B (2022-06-29)
G [auth I]SCOP2B SuperfamilyTrypsin-like serine proteases8071557 3000114 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth M]V-set_9e6nk6M1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_9ECOD (1.6)
A [auth M]V-set_11e6nk6M2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_11ECOD (1.6)
C [auth O]V-set_9e6nk6O1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_9ECOD (1.6)
C [auth O]V-set_11e6nk6O2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_11ECOD (1.6)
B [auth N]V-set_9e6nk6N1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_9ECOD (1.6)
B [auth N]V-set_11e6nk6N2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_11ECOD (1.6)
D [auth P]V-set_9e6nk6P1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_9ECOD (1.6)
D [auth P]V-set_11e6nk6P2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_11ECOD (1.6)
E [auth A]Alpha_E1_glycop_2nde6nk6A2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Alpha_E1_glycop_2ndECOD (1.6)
E [auth A]Alpha_E1_glycop_1ste6nk6A1 A: beta complex topologyX: Viral glycoprotein, central and dimerisation domains-likeH: Viral glycoprotein, central and dimerisation domains (From Topology)T: Viral glycoprotein, central and dimerisation domainsF: Alpha_E1_glycop_1stECOD (1.6)
E [auth A]Alpha_E1_glycop_likee6nk6A3 A: extended segmentsX: Transmembrane helix of E1 envelope glycoprotein (From Topology)H: Transmembrane helix of E1 envelope glycoprotein (From Topology)T: Transmembrane helix of E1 envelope glycoproteinF: Alpha_E1_glycop_likeECOD (1.6)
N [auth D]Alpha_E1_glycop_2nde6nk6D2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Alpha_E1_glycop_2ndECOD (1.6)
N [auth D]Alpha_E1_glycop_1ste6nk6D1 A: beta complex topologyX: Viral glycoprotein, central and dimerisation domains-likeH: Viral glycoprotein, central and dimerisation domains (From Topology)T: Viral glycoprotein, central and dimerisation domainsF: Alpha_E1_glycop_1stECOD (1.6)
N [auth D]Alpha_E1_glycop_likee6nk6D3 A: extended segmentsX: Transmembrane helix of E1 envelope glycoprotein (From Topology)H: Transmembrane helix of E1 envelope glycoprotein (From Topology)T: Transmembrane helix of E1 envelope glycoproteinF: Alpha_E1_glycop_likeECOD (1.6)
H [auth B]Alpha_E1_glycop_2nde6nk6B2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Alpha_E1_glycop_2ndECOD (1.6)
H [auth B]Alpha_E1_glycop_1ste6nk6B1 A: beta complex topologyX: Viral glycoprotein, central and dimerisation domains-likeH: Viral glycoprotein, central and dimerisation domains (From Topology)T: Viral glycoprotein, central and dimerisation domainsF: Alpha_E1_glycop_1stECOD (1.6)
H [auth B]Alpha_E1_glycop_likee6nk6B3 A: extended segmentsX: Transmembrane helix of E1 envelope glycoprotein (From Topology)H: Transmembrane helix of E1 envelope glycoprotein (From Topology)T: Transmembrane helix of E1 envelope glycoproteinF: Alpha_E1_glycop_likeECOD (1.6)
K [auth C]Alpha_E1_glycop_2nde6nk6C2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Alpha_E1_glycop_2ndECOD (1.6)
K [auth C]Alpha_E1_glycop_1ste6nk6C1 A: beta complex topologyX: Viral glycoprotein, central and dimerisation domains-likeH: Viral glycoprotein, central and dimerisation domains (From Topology)T: Viral glycoprotein, central and dimerisation domainsF: Alpha_E1_glycop_1stECOD (1.6)
K [auth C]Alpha_E1_glycop_likee6nk6C3 A: extended segmentsX: Transmembrane helix of E1 envelope glycoprotein (From Topology)H: Transmembrane helix of E1 envelope glycoprotein (From Topology)T: Transmembrane helix of E1 envelope glycoproteinF: Alpha_E1_glycop_likeECOD (1.6)
JPeptidase_S3e6nk6J1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Peptidase_S3ECOD (1.6)
M [auth K]Peptidase_S3e6nk6K1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Peptidase_S3ECOD (1.6)
P [auth L]Peptidase_S3e6nk6L1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Peptidase_S3ECOD (1.6)
G [auth I]Peptidase_S3e6nk6I1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Peptidase_S3ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth M],
B [auth N],
C [auth O],
D [auth P]
PF07686Immunoglobulin V-set domain (V-set)Immunoglobulin V-set domainThis domain is found in antibodies as well as neural protein P0 and CTL4 amongst others.Domain
E [auth A],
H [auth B],
K [auth C],
N [auth D]
PF01589Alphavirus E1 glycoprotein (Alpha_E1_glycop)Alphavirus E1 glycoprotein- Family
F [auth E],
I [auth F],
L [auth G],
O [auth H]
PF00943Alphavirus E2 glycoprotein (Alpha_E2_glycop)Alphavirus E2 glycoprotein- Family
F [auth E],
I [auth F],
L [auth G],
O [auth H]
PF01589Alphavirus E1 glycoprotein (Alpha_E1_glycop)Alphavirus E1 glycoprotein- Family
G [auth I],
J,
M [auth K],
P [auth L]
PF00944Alphavirus core protein (Peptidase_S3)Alphavirus core proteinAlso known as coat protein C and capsid protein C. This makes the literature very confusing. Alphaviruses consist of a nucleoprotein core, a lipid membrane which envelopes the core, and glycoprotein spikes protruding from the lipid membrane.Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth M],
B [auth N],
C [auth O],
D [auth P]
Matrix remodeling-associated protein 8-
E [auth A],
H [auth B],
K [auth C],
N [auth D]
E1 glycoprotein
F [auth E],
I [auth F],
L [auth G],
O [auth H]
E2 glycoprotein
G [auth I],
J,
M [auth K],
P [auth L]
Capsid protein

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth M],
B [auth N],
C [auth O],
D [auth P]
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
A [auth M],
B [auth N],
C [auth O],
D [auth P]
IPR003599Immunoglobulin subtypeDomain
A [auth M],
B [auth N],
C [auth O],
D [auth P]
IPR013783Immunoglobulin-like foldHomologous Superfamily
A [auth M],
B [auth N],
C [auth O],
D [auth P]
IPR042472Matrix remodeling-associated protein 8Family
A [auth M],
B [auth N],
C [auth O],
D [auth P]
IPR013106Immunoglobulin V-set domainDomain
A [auth M],
B [auth N],
C [auth O],
D [auth P]
IPR007110Immunoglobulin-like domainDomain
E [auth A],
H [auth B],
K [auth C],
N [auth D]
IPR002533Alphavirus E3 spike glycoproteinDomain
E [auth A],
H [auth B],
K [auth C],
N [auth D]
IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
E [auth A],
H [auth B],
K [auth C],
N [auth D]
IPR014756Immunoglobulin E-setHomologous Superfamily
E [auth A],
H [auth B],
K [auth C],
N [auth D]
IPR042304Alphavirus E2 glycoprotein, domain AHomologous Superfamily
E [auth A],
H [auth B],
K [auth C],
N [auth D]
IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
E [auth A],
H [auth B],
K [auth C],
N [auth D]
IPR009003Peptidase S1, PA clanHomologous Superfamily
E [auth A],
H [auth B],
K [auth C],
N [auth D]
IPR042305Alphavirus E2 glycoprotein, domain BHomologous Superfamily
E [auth A],
H [auth B],
K [auth C],
N [auth D]
IPR042306Alphavirus E2 glycoprotein, domain CHomologous Superfamily
E [auth A],
H [auth B],
K [auth C],
N [auth D]
IPR000936Alphavirus E2 glycoproteinFamily
E [auth A],
H [auth B],
K [auth C],
N [auth D]
IPR000930Peptidase S3, togavirinDomain
E [auth A],
H [auth B],
K [auth C],
N [auth D]
IPR002548Alphavirus E1 glycoproteinDomain
E [auth A],
H [auth B],
K [auth C],
N [auth D]
IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily
E [auth A],
H [auth B],
K [auth C],
N [auth D]
IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
F [auth E],
I [auth F],
L [auth G],
O [auth H]
IPR002533Alphavirus E3 spike glycoproteinDomain
F [auth E],
I [auth F],
L [auth G],
O [auth H]
IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
F [auth E],
I [auth F],
L [auth G],
O [auth H]
IPR014756Immunoglobulin E-setHomologous Superfamily
F [auth E],
I [auth F],
L [auth G],
O [auth H]
IPR042304Alphavirus E2 glycoprotein, domain AHomologous Superfamily
F [auth E],
I [auth F],
L [auth G],
O [auth H]
IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
F [auth E],
I [auth F],
L [auth G],
O [auth H]
IPR009003Peptidase S1, PA clanHomologous Superfamily
F [auth E],
I [auth F],
L [auth G],
O [auth H]
IPR042305Alphavirus E2 glycoprotein, domain BHomologous Superfamily
F [auth E],
I [auth F],
L [auth G],
O [auth H]
IPR042306Alphavirus E2 glycoprotein, domain CHomologous Superfamily
F [auth E],
I [auth F],
L [auth G],
O [auth H]
IPR000936Alphavirus E2 glycoproteinFamily
F [auth E],
I [auth F],
L [auth G],
O [auth H]
IPR000930Peptidase S3, togavirinDomain
F [auth E],
I [auth F],
L [auth G],
O [auth H]
IPR002548Alphavirus E1 glycoproteinDomain
F [auth E],
I [auth F],
L [auth G],
O [auth H]
IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily
F [auth E],
I [auth F],
L [auth G],
O [auth H]
IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
G [auth I],
J,
M [auth K],
P [auth L]
IPR002533Alphavirus E3 spike glycoproteinDomain
G [auth I],
J,
M [auth K],
P [auth L]
IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
G [auth I],
J,
M [auth K],
P [auth L]
IPR014756Immunoglobulin E-setHomologous Superfamily
G [auth I],
J,
M [auth K],
P [auth L]
IPR042304Alphavirus E2 glycoprotein, domain AHomologous Superfamily
G [auth I],
J,
M [auth K],
P [auth L]
IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
G [auth I],
J,
M [auth K],
P [auth L]
IPR009003Peptidase S1, PA clanHomologous Superfamily
G [auth I],
J,
M [auth K],
P [auth L]
IPR042305Alphavirus E2 glycoprotein, domain BHomologous Superfamily
G [auth I],
J,
M [auth K],
P [auth L]
IPR042306Alphavirus E2 glycoprotein, domain CHomologous Superfamily
G [auth I],
J,
M [auth K],
P [auth L]
IPR000936Alphavirus E2 glycoproteinFamily
G [auth I],
J,
M [auth K],
P [auth L]
IPR000930Peptidase S3, togavirinDomain
G [auth I],
J,
M [auth K],
P [auth L]
IPR002548Alphavirus E1 glycoproteinDomain
G [auth I],
J,
M [auth K],
P [auth L]
IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily
G [auth I],
J,
M [auth K],
P [auth L]
IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily