6MWQ
Single particle cryoEM structure of a DARPin-aldolase platform in complex with GFP
Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth G] | d6mwqg_ | Alpha and beta proteins (a+b) | GFP-like | GFP-like | Fluorescent proteins | Green fluorescent protein, GFP | Jellyfish (Aequorea victoria ) [TaxId: 6100 ], | SCOPe (2.08) |
D [auth J] | d6mwqj_ | Alpha and beta proteins (a+b) | GFP-like | GFP-like | Fluorescent proteins | Green fluorescent protein, GFP | Jellyfish (Aequorea victoria ) [TaxId: 6100 ], | SCOPe (2.08) |
F [auth I] | d6mwqi_ | Alpha and beta proteins (a+b) | GFP-like | GFP-like | Fluorescent proteins | Green fluorescent protein, GFP | Jellyfish (Aequorea victoria ) [TaxId: 6100 ], | SCOPe (2.08) |
H | d6mwqh_ | Alpha and beta proteins (a+b) | GFP-like | GFP-like | Fluorescent proteins | Green fluorescent protein, GFP | Jellyfish (Aequorea victoria ) [TaxId: 6100 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Aldolase | 8035506 | 3000445 | SCOP2B (2022-06-29) |
C [auth B] | SCOP2B Superfamily | Aldolase | 8035506 | 3000445 | SCOP2B (2022-06-29) |
E [auth C] | SCOP2B Superfamily | Aldolase | 8035506 | 3000445 | SCOP2B (2022-06-29) |
G [auth D] | SCOP2B Superfamily | Aldolase | 8035506 | 3000445 | SCOP2B (2022-06-29) |
B [auth G] | SCOP2B Superfamily | GFP-like | 8096046 | 3000576 | SCOP2B (2022-06-29) |
D [auth J] | SCOP2B Superfamily | GFP-like | 8096046 | 3000576 | SCOP2B (2022-06-29) |
F [auth I] | SCOP2B Superfamily | GFP-like | 8096046 | 3000576 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | GFP-like | 8096046 | 3000576 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Ank_2 | e6mwqA2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Ankyrin repeat (From Topology) | T: Ankyrin repeat | F: Ank_2 | ECOD (1.6) |
A | Glycolytic | e6mwqA1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Glycolytic | ECOD (1.6) |
C [auth B] | Ank_2 | e6mwqB2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Ankyrin repeat (From Topology) | T: Ankyrin repeat | F: Ank_2 | ECOD (1.6) |
C [auth B] | Glycolytic | e6mwqB1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Glycolytic | ECOD (1.6) |
E [auth C] | Ank_2 | e6mwqC2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Ankyrin repeat (From Topology) | T: Ankyrin repeat | F: Ank_2 | ECOD (1.6) |
E [auth C] | Glycolytic | e6mwqC1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Glycolytic | ECOD (1.6) |
G [auth D] | Ank_2 | e6mwqD2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Ankyrin repeat (From Topology) | T: Ankyrin repeat | F: Ank_2 | ECOD (1.6) |
G [auth D] | Glycolytic | e6mwqD1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Glycolytic | ECOD (1.6) |
B [auth G] | GFP | e6mwqG1 | A: beta barrels | X: GFP-like (From Topology) | H: GFP-like (From Topology) | T: GFP-like | F: GFP | ECOD (1.6) |
D [auth J] | GFP | e6mwqJ1 | A: beta barrels | X: GFP-like (From Topology) | H: GFP-like (From Topology) | T: GFP-like | F: GFP | ECOD (1.6) |
F [auth I] | GFP | e6mwqI1 | A: beta barrels | X: GFP-like (From Topology) | H: GFP-like (From Topology) | T: GFP-like | F: GFP | ECOD (1.6) |
H | GFP | e6mwqH1 | A: beta barrels | X: GFP-like (From Topology) | H: GFP-like (From Topology) | T: GFP-like | F: GFP | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B [auth G] | 2.40.155.10 | Mainly Beta | Beta Barrel | Green Fluorescent Protein | Green fluorescent protein | CATH (4.3.0) |
D [auth J] | 2.40.155.10 | Mainly Beta | Beta Barrel | Green Fluorescent Protein | Green fluorescent protein | CATH (4.3.0) |
F [auth I] | 2.40.155.10 | Mainly Beta | Beta Barrel | Green Fluorescent Protein | Green fluorescent protein | CATH (4.3.0) |
H | 2.40.155.10 | Mainly Beta | Beta Barrel | Green Fluorescent Protein | Green fluorescent protein | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, C [auth B], E [auth C], G [auth D] | PF00274 | Fructose-bisphosphate aldolase class-I (Glycolytic) | Fructose-bisphosphate aldolase class-I | - | Domain |
B [auth G], D [auth J], F [auth I], H | PF01353 | Green fluorescent protein (GFP) | Green fluorescent protein | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, C [auth B], E [auth C], G [auth D] | IPR000741 | Fructose-bisphosphate aldolase, class-I | Family |
A, C [auth B], E [auth C], G [auth D] | IPR029768 | Fructose-bisphosphate aldolase class-I active site | Conserved Site |
A, C [auth B], E [auth C], G [auth D] | IPR013785 | Aldolase-type TIM barrel | Homologous Superfamily |
B [auth G], D [auth J], F [auth I], H | IPR000786 | Green fluorescent protein, GFP | Family |
B [auth G], D [auth J], F [auth I], H | IPR011584 | Green fluorescent protein-related | Family |
B [auth G], D [auth J], F [auth I], H | IPR009017 | Green fluorescent protein | Homologous Superfamily |