6J45

Crystal structure of E. coli peptide deformylase enzyme and chaperone trigger factor fitted into the cryo-EM density map of the complex

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth P]	SCOP2 Family	Peptide deformylase	8097769	4002432	SCOP2 (2022-06-29)
A [auth P]	SCOP2 Superfamily	Peptide deformylase	8097770	3001229	SCOP2 (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth P]	PF01327	Polypeptide deformylase (Pep_deformylase)	Polypeptide deformylase	-	Domain
B [auth Q]	PF05698	Bacterial trigger factor protein (TF) C-terminus (Trigger_C)	Bacterial trigger factor protein (TF) C-terminus	-	Family
B [auth Q]	PF05697	Bacterial trigger factor protein (TF) (Trigger_N)	Bacterial trigger factor protein (TF)	-	Family
B [auth Q]	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase (FKBP_C)	FKBP-type peptidyl-prolyl cis-trans isomerase	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth P]	Peptide deformylase	peptide deformylase activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides hydrolase activity catalytic activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds cation binding ion binding binding metal ion binding small molecule binding	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process nitrogen compound metabolic process metabolic process cellular process organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process translation gene expression macromolecule biosynthetic process organic substance metabolic process biosynthetic process organic substance biosynthetic process nitrogen compound metabolic process metabolic process cellular process protein metabolic process macromolecule metabolic process	-
B [auth Q]	Trigger factor	isomerase activity catalytic activity, acting on a protein peptidyl-prolyl cis-trans isomerase activity catalytic activity cis-trans isomerase activity	cellular process cell cycle organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process primary metabolic process gene expression macromolecule biosynthetic process protein maturation organic substance metabolic process protein folding biosynthetic process organic substance biosynthetic process nitrogen compound metabolic process cellular process cell cycle organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process primary metabolic process gene expression macromolecule biosynthetic process protein maturation organic substance metabolic process protein folding biosynthetic process organic substance biosynthetic process nitrogen compound metabolic process metabolic process protein metabolic process macromolecule metabolic process cell division protein localization establishment of protein localization cellular localization nitrogen compound transport transport organic substance transport establishment of localization localization protein transport cellular macromolecule localization macromolecule localization	intracellular anatomical structure cytoplasm cellular anatomical entity

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth P]	IPR023635	Peptide deformylase	Family
A [auth P]	IPR036821	Peptide deformylase superfamily	Homologous Superfamily
B [auth Q]	IPR046357	Peptidyl-prolyl cis-trans isomerase domain superfamily	Homologous Superfamily
B [auth Q]	IPR036611	Trigger factor ribosome-binding domain superfamily	Homologous Superfamily
B [auth Q]	IPR008881	Trigger factor, ribosome-binding, bacterial	Domain
B [auth Q]	IPR027304	Trigger factor/SurA domain superfamily	Homologous Superfamily
B [auth Q]	IPR037041	Trigger factor, C-terminal domain superfamily	Homologous Superfamily
B [auth Q]	IPR001179	FKBP-type peptidyl-prolyl cis-trans isomerase domain	Domain
B [auth Q]	IPR008880	Trigger factor, C-terminal	Domain
B [auth Q]	IPR005215	Trigger factor	Family

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.