6GQV
Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| J [auth E] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8053109 | 3000334 | SCOP2B (2022-06-29) |
| K [auth F] | SCOP2B Superfamily | Ribosomal protein L30p/L7e | 8052917 | 3001378 | SCOP2B (2022-06-29) |
| K [auth F] | SCOP2B Superfamily | Ribosomal L30p/L7e protein N-terminal domain-lke | 8052916 | 3002152 | SCOP2B (2022-06-29) |
| L [auth G] | SCOP2B Superfamily | L30e-like | 8063962 | 3001739 | SCOP2B (2022-06-29) |
| N [auth I] | SCOP2B Superfamily | Ribosomal protein L16p/L10e | 8079407 | 3000884 | SCOP2B (2022-06-29) |
| O [auth J] | SCOP2B Superfamily | RL5-like | 8099392 | 3001709 | SCOP2B (2022-06-29) |
| P [auth L] | SCOP2B Superfamily | Ribosomal protein L13e-like | 8053159 | 3002162 | SCOP2B (2022-06-29) |
| R [auth N] | SCOP2B Superfamily | Ribosomal proteins S24e L23 and L15e | 8082481 | 3000210 | SCOP2B (2022-06-29) |
| S [auth O] | SCOP2B Superfamily | Ribosomal protein L13 | 8066053 | 3001134 | SCOP2B (2022-06-29) |
| T [auth P] | SCOP2B Superfamily | Ribosomal protein L22 | 8076708 | 3001078 | SCOP2B (2022-06-29) |
| U [auth Q] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8095970 | 3001045 | SCOP2B (2022-06-29) |
| V [auth R] | SCOP2B Superfamily | Ribosomal protein L19 (L19e) | 8077485 | 3000890 | SCOP2B (2022-06-29) |
| Y [auth U] | SCOP2B Superfamily | 60S Ribosomal protein L22e | 8053058 | 3002158 | SCOP2B (2022-06-29) |
| Z [auth V] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8103364 | 3000433 | SCOP2B (2022-06-29) |
| BA [auth X] | SCOP2B Superfamily | Ribosomal proteins S24e L23 and L15e | 8095962 | 3000210 | SCOP2B (2022-06-29) |
| CA [auth Y] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8076760 | 3000334 | SCOP2B (2022-06-29) |
| DA [auth Z] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8053046 | 3000334 | SCOP2B (2022-06-29) |
| EA [auth a] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8077127 | 3001045 | SCOP2B (2022-06-29) |
| FA [auth b] | SCOP2B Superfamily | Ribosomal protein L29e | 8053045 | 3002157 | SCOP2B (2022-06-29) |
| GA [auth c] | SCOP2B Superfamily | L30e-like | 8039862 | 3001739 | SCOP2B (2022-06-29) |
| JA [auth f] | SCOP2B Superfamily | Translational proteins | 8087451 | 3000811 | SCOP2B (2022-06-29) |
| KA [auth g] | SCOP2B Superfamily | Ribosomal protein L34e-like | 8053547 | 3002203 | SCOP2B (2022-06-29) |
| MA [auth i] | SCOP2B Superfamily | Ribosomal protein L36e | 8053115 | 3002161 | SCOP2B (2022-06-29) |
| NA [auth j] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8080044 | 3001320 | SCOP2B (2022-06-29) |
| OA [auth k] | SCOP2B Superfamily | Ribosomal L38e protein-like | 8053562 | 3002206 | SCOP2B (2022-06-29) |
| PA [auth l] | SCOP2B Superfamily | Ribosomal protein L39e | 8078549 | 3001756 | SCOP2B (2022-06-29) |
| TA [auth p] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8103126 | 3001320 | SCOP2B (2022-06-29) |
| VA [auth q] | SCOP2B Superfamily | SIS domain/Ribosomal protein S2-like | 8061280 | 3001397 | SCOP2B (2022-06-29) |
| WA [auth r] | SCOP2B Superfamily | Ribosomal S3Ae-like | 8053211 | 3002166 | SCOP2B (2022-06-29) |
| ZA [auth u] | SCOP2B Superfamily | Alpha-L RNA-binding motif | 8052758 | 3001473 | SCOP2B (2022-06-29) |
| ZA [auth u] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8052759 | 3000135 | SCOP2B (2022-06-29) |
| ZA [auth u] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8052760 | 3000334 | SCOP2B (2022-06-29) |
| AB [auth v] | SCOP2B Superfamily | Ribosomal protein S7 | 8065993 | 3000799 | SCOP2B (2022-06-29) |
| BB [auth w] | SCOP2B Superfamily | GS N-terminal domain-like | 8053173 | 3000408 | SCOP2B (2022-06-29) |
| DB [auth y] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8053083 | 3000433 | SCOP2B (2022-06-29) |
| FB [auth AA] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8055713 | 3000034 | SCOP2B (2022-06-29) |
| GB [auth AB] | SCOP2B Superfamily | Ribosomal S17 N-terminal domain-like | 8052736 | 3002138 | SCOP2B (2022-06-29) |
| GB [auth AB] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8052738 | 3000135 | SCOP2B (2022-06-29) |
| HB [auth AC] | SCOP2B Superfamily | L30e-like | 8096946 | 3001739 | SCOP2B (2022-06-29) |
| IB [auth AD] | SCOP2B Superfamily | S15/NS1 RNA-binding domain | 8052974 | 3001284 | SCOP2B (2022-06-29) |
| IB [auth AD] | SCOP2B Superfamily | Homeodomain-like | 8052973 | 3000001 | SCOP2B (2022-06-29) |
| JB [auth AE] | SCOP2B Superfamily | Translational machinery components | 8098660 | 3000571 | SCOP2B (2022-06-29) |
| KB [auth AF] | SCOP2B Superfamily | Ribosomal protein S19 | 8086076 | 3000686 | SCOP2B (2022-06-29) |
| LB [auth AG] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8103366 | 3000100 | SCOP2B (2022-06-29) |
| NB [auth AI] | SCOP2B Superfamily | S13-like H2TH domain | 8098450 | 3000053 | SCOP2B (2022-06-29) |
| PB [auth AK] | SCOP2B Superfamily | Ribosomal protein S10 | 8098648 | 3001336 | SCOP2B (2022-06-29) |
| QB [auth AL] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8053136 | 3000068 | SCOP2B (2022-06-29) |
| G [auth B] | SCOP2B Superfamily | Translational proteins | 8078363 | 3000811 | SCOP2B (2022-06-29) |
| RB [auth AM] | SCOP2B Superfamily | Ribosomal protein S8 | 8096922 | 3000709 | SCOP2B (2022-06-29) |
| UB [auth AP] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8059235 | 3000034 | SCOP2B (2022-06-29) |
| VB [auth AQ] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8053149 | 3000068 | SCOP2B (2022-06-29) |
| XB [auth AS] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8063430 | 3000135 | SCOP2B (2022-06-29) |
| YB [auth AT] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8052569 | 3000068 | SCOP2B (2022-06-29) |
| ZB [auth AU] | SCOP2B Superfamily | Ribosomal protein S30e-like | 8053451 | 3002190 | SCOP2B (2022-06-29) |
| H [auth C] | SCOP2B Superfamily | 60S ribosomal protein L4 C-terminal domain-like | 8052815 | 3002143 | SCOP2B (2022-06-29) |
| H [auth C] | SCOP2B Superfamily | Ribosomal protein L4 | 8052816 | 3001146 | SCOP2B (2022-06-29) |
| CC [auth AX] | SCOP2B Superfamily | Ras-like P-loop GTPases | 8043945 | 3002022 | SCOP2B (2022-06-29) |
| CC [auth AX] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8043947 | 3000100 | SCOP2B (2022-06-29) |
| CC [auth AX] | SCOP2B Superfamily | EF-Tu post-G domain-like | 8043943 | 3002024 | SCOP2B (2022-06-29) |
| CC [auth AX] | SCOP2B Superfamily | EF-G C-terminal domain-like | 8043949 | 3001287 | SCOP2B (2022-06-29) |
| CC [auth AX] | SCOP2B Superfamily | EF-G C-terminal domain-like | 8043948 | 3001287 | SCOP2B (2022-06-29) |
| FC [auth BA] | SCOP2B Superfamily | Ribosomal protein L1p/L10e-like | 8098448 | 3001911 | SCOP2B (2022-06-29) |
| I [auth D] | SCOP2B Superfamily | Translational machinery components | 8052875 | 3000571 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| J [auth E] | Ribosomal_L6e | e6gqvE1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L6e | ECOD (1.6) |
| K [auth F] | Ribosomal_L30_1 | e6gqvF1 | A: a+b two layers | X: Ribosomal protein L30p/L7e (From Topology) | H: Ribosomal protein L30p/L7e (From Topology) | T: Ribosomal protein L30p/L7e | F: Ribosomal_L30_1 | ECOD (1.6) |
| L [auth G] | Ribosomal_L7Ae_1 | e6gqvG1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: Ribosomal_L7Ae_1 | ECOD (1.6) |
| M [auth H] | Ribosomal_L6_2 | e6gqvH1 | A: a+b two layers | X: Ribosomal protein L6 (From Topology) | H: Ribosomal protein L6 (From Topology) | T: Ribosomal protein L6 | F: Ribosomal_L6_2 | ECOD (1.6) |
| M [auth H] | Ribosomal_L6 | e6gqvH2 | A: a+b two layers | X: Ribosomal protein L6 (From Topology) | H: Ribosomal protein L6 (From Topology) | T: Ribosomal protein L6 | F: Ribosomal_L6 | ECOD (1.6) |
| N [auth I] | Ribosomal_L16 | e6gqvI1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal protein L10e | F: Ribosomal_L16 | ECOD (1.6) |
| O [auth J] | Ribosomal_L5_C | e6gqvJ1 | A: a+b two layers | X: Ribosomal protein L5 (From Topology) | H: Ribosomal protein L5 (From Topology) | T: Ribosomal protein L5 | F: Ribosomal_L5_C | ECOD (1.6) |
| P [auth L] | Ribosomal_L13e | e6gqvL1 | A: extended segments | X: RPL13 (From Topology) | H: RPL13 (From Topology) | T: RPL13 | F: Ribosomal_L13e | ECOD (1.6) |
| Q [auth M] | Ribosomal_L14e | e6gqvM1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L14e | ECOD (1.6) |
| R [auth N] | Ribosomal_L15e | e6gqvN1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: Ribosomal_L15e | ECOD (1.6) |
| S [auth O] | Ribosomal_L13 | e6gqvO1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L13 and L16-A (From Topology) | T: Ribosomal protein L13 and L16-A | F: Ribosomal_L13 | ECOD (1.6) |
| T [auth P] | Ribosomal_L22 | e6gqvP1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Ribosomal protein L22 (From Topology) | T: Ribosomal protein L22 | F: Ribosomal_L22 | ECOD (1.6) |
| U [auth Q] | Ribosomal_L18 | e6gqvQ1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: Ribosomal_L18 | ECOD (1.6) |
| V [auth R] | Ribosomal_L19e_N | e6gqvR1 | A: alpha arrays | X: Ribosomal protein L19 (L19e) N-terminal domain (From Topology) | H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology) | T: Ribosomal protein L19 (L19e) N-terminal domain | F: Ribosomal_L19e_N | ECOD (1.6) |
| V [auth R] | Ribosomal_L19e_C | e6gqvR2 | A: alpha bundles | X: Ribosomal protein L19 (L19e) C-terminal domain (From Topology) | H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology) | T: Ribosomal protein L19 (L19e) C-terminal domain | F: Ribosomal_L19e_C | ECOD (1.6) |
| W [auth S] | Ribosomal_L18A | e6gqvS1 | A: a+b two layers | X: GP2-like | H: RplX-like (From Topology) | T: RplX-like | F: Ribosomal_L18A | ECOD (1.6) |
| X [auth T] | Ribosomal_L21e | e6gqvT1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L21e | ECOD (1.6) |
| Y [auth U] | Ribosomal_L22e | e6gqvU1 | A: a+b two layers | X: Ribosomal protein L22e (From Topology) | H: Ribosomal protein L22e (From Topology) | T: Ribosomal protein L22e | F: Ribosomal_L22e | ECOD (1.6) |
| Z [auth V] | Ribosomal_L14 | e6gqvV1 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: Ribosomal_L14 | ECOD (1.6) |
| AA [auth W] | Ribosomal_L24e | e6gqvW1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: Ribosomal_L24e | ECOD (1.6) |
| BA [auth X] | Ribosomal_L23_3 | e6gqvX1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: Ribosomal_L23_3 | ECOD (1.6) |
| CA [auth Y] | Ribosomal_L26 | e6gqvY1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L26 | ECOD (1.6) |
| DA [auth Z] | Ribosomal_L27e | e6gqvZ1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L27e | ECOD (1.6) |
| EA [auth a] | Ribosomal_L18 | e6gqva1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: Ribosomal_L18 | ECOD (1.6) |
| FA [auth b] | Ribosomal_L29e | e6gqvb1 | A: extended segments | X: RPL29 (From Topology) | H: RPL29 (From Topology) | T: RPL29 | F: Ribosomal_L29e | ECOD (1.6) |
| GA [auth c] | Ribosomal_L7Ae | e6gqvc1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: Ribosomal_L7Ae | ECOD (1.6) |
| HA [auth d] | Ribosomal_L31e | e6gqvd1 | A: a+b two layers | X: Ribosomal protein L31e-like | H: Ribosomal protein L31e/gp120 outer domain (From Topology) | T: Ribosomal protein L31e/gp120 outer domain | F: Ribosomal_L31e | ECOD (1.6) |
| IA [auth e] | Ribosomal_L32e | e6gqve1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L32e (From Topology) | T: Ribosomal protein L32e | F: Ribosomal_L32e | ECOD (1.6) |
| JA [auth f] | Ribosomal_L35Ae | e6gqvf1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Ribosomal_L35Ae | ECOD (1.6) |
| KA [auth g] | Ribosomal_L34e | e6gqvg1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: RPL34 (From Topology) | T: RPL34 | F: Ribosomal_L34e | ECOD (1.6) |
| LA [auth h] | Ribosomal_L29_2 | e6gqvh1 | A: alpha bundles | X: Long alpha-hairpin | H: Ribosomal protein L29 (L29p) (From Topology) | T: Ribosomal protein L29 (L29p) | F: Ribosomal_L29_2 | ECOD (1.6) |
| MA [auth i] | Ribosomal_L36e | e6gqvi1 | A: alpha arrays | X: 60S ribosomal protein rpL36 (L36e) (From Topology) | H: 60S ribosomal protein rpL36 (L36e) (From Topology) | T: 60S ribosomal protein rpL36 (L36e) | F: Ribosomal_L36e | ECOD (1.6) |
| D [auth P0] | Ribosomal_L10 | e6gqvP02 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein L10-like (From Topology) | T: Ribosomal protein L10-like | F: Ribosomal_L10 | ECOD (1.6) |
| D [auth P0] | Ribosomal_P0_L10e | e6gqvP01 | A: a+b two layers | X: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology) | H: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology) | T: Insertion domain in 60S ribosomal protein rpP0 (L10P) | F: Ribosomal_P0_L10e | ECOD (1.6) |
| NA [auth j] | Ribosomal_L37e | e6gqvj1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_L37e | ECOD (1.6) |
| OA [auth k] | Ribosomal_L38e | e6gqvk1 | A: a+b two layers | X: SRP9/14-like | H: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology) | T: Signal recognition particle alu RNA binding heterodimer SRP9/14-related | F: Ribosomal_L38e | ECOD (1.6) |
| PA [auth l] | Ribosomal_L39 | e6gqvl1 | A: extended segments | X: Ribosomal protein L39e (From Topology) | H: Ribosomal protein L39e (From Topology) | T: Ribosomal protein L39e | F: Ribosomal_L39 | ECOD (1.6) |
| QA [auth m] | Ribosomal_L40e | e6gqvm1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_L40e | ECOD (1.6) |
| RA [auth n] | Ribosomal_L41 | e6gqvn1 | A: extended segments | X: Ribosomal protein L41-A (From Topology) | H: Ribosomal protein L41-A (From Topology) | T: Ribosomal protein L41-A | F: Ribosomal_L41 | ECOD (1.6) |
| SA [auth o] | Ribosomal_L44 | e6gqvo1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_L44 | ECOD (1.6) |
| TA [auth p] | Ribosomal_L37ae | e6gqvp1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_L37ae | ECOD (1.6) |
| VA [auth q] | Ribosomal_S2_2 | e6gqvq1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Ribosomal protein S2/SIS domain (From Topology) | T: Ribosomal protein S2/SIS domain | F: Ribosomal_S2_2 | ECOD (1.6) |
| WA [auth r] | Ribosomal_S3Ae_N | e6gqvr1 | A: beta barrels | X: Ribosomal protein L25-like | H: 40S ribosomal protein S3A N-terminal domain (From Topology) | T: 40S ribosomal protein S3A N-terminal domain | F: Ribosomal_S3Ae_N | ECOD (1.6) |
| WA [auth r] | Ribosomal_S3Ae_C | e6gqvr2 | A: a+b two layers | X: T-fold | H: 40S ribosomal protein S3A C-terminal domain (From Topology) | T: 40S ribosomal protein S3A C-terminal domain | F: Ribosomal_S3Ae_C | ECOD (1.6) |
| E [auth P2] | Ribosomal_L11 | e6gqvP22 | A: alpha arrays | X: HTH | H: HTH | T: Ribosomal protein L11, C-terminal domain | F: Ribosomal_L11 | ECOD (1.6) |
| E [auth P2] | KOG0886 | e6gqvP21 | A: a+b two layers | X: Ribosomal protein L11/L12e N-terminal domain-like | H: Ribosomal protein L11/L12e N-terminal domain (From Topology) | T: Ribosomal protein L11/L12e N-terminal domain | F: KOG0886 | ECOD (1.6) |
| XA [auth s] | Ribosomal_S5_C_1 | e6gqvs1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: Ribosomal_S5_C_1 | ECOD (1.6) |
| XA [auth s] | Ribosomal_S5_3 | e6gqvs2 | A: a+b two layers | X: dsRBD-like | H: dsRNA-binding domain-like (From Topology) | T: dsRNA-binding domain-like | F: Ribosomal_S5_3 | ECOD (1.6) |
| XA [auth s] | Ribosomal_S5_2 | e6gqvs3 | A: extended segments | X: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology) | H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology) | T: N-terminal region in 40S ribosomal protein rpS2 (S5p) | F: Ribosomal_S5_2 | ECOD (1.6) |
| YA [auth t] | Ribosomal_S3_C | e6gqvt1 | A: a+b two layers | X: T-fold | H: Ribosomal protein S3-C (From Topology) | T: Ribosomal protein S3-C | F: Ribosomal_S3_C | ECOD (1.6) |
| YA [auth t] | KH_2_3 | e6gqvt2 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: KH_2_3 | ECOD (1.6) |
| ZA [auth u] | Ribosomal_S4e | e6gqvu3 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosomal_S4e | ECOD (1.6) |
| ZA [auth u] | 40S_S4_C | e6gqvu1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: 40S_S4_C | ECOD (1.6) |
| ZA [auth u] | RS4NT | e6gqvu2 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Alpha-L RNA-binding motif | F: RS4NT | ECOD (1.6) |
| AB [auth v] | Ribosomal_S7_1 | e6gqvv1 | A: alpha arrays | X: Ribosomal protein S7 (From Topology) | H: Ribosomal protein S7 (From Topology) | T: Ribosomal protein S7 | F: Ribosomal_S7_1 | ECOD (1.6) |
| BB [auth w] | Ribosomal_S6e | e6gqvw1 | A: beta barrels | X: Ribosomal protein L25-like | H: Ribosomal protein L25-like (From Topology) | T: Ribosomal protein L25-like | F: Ribosomal_S6e | ECOD (1.6) |
| CB [auth x] | Ribosomal_S7e_N | e6gqvx2 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: 40S ribosomal protein S7-A (From Topology) | T: 40S ribosomal protein S7-A | F: Ribosomal_S7e_N | ECOD (1.6) |
| CB [auth x] | Ribosomal_S7e_C_2 | e6gqvx1 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: 40S ribosomal protein S7-A (From Topology) | T: 40S ribosomal protein S7-A | F: Ribosomal_S7e_C_2 | ECOD (1.6) |
| DB [auth y] | Ribosomal_S8e | e6gqvy1 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: Ribosomal_S8e | ECOD (1.6) |
| EB [auth z] | S4 | e6gqvz1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Alpha-L RNA-binding motif | F: S4 | ECOD (1.6) |
| FB [auth AA] | S10_plectin | e6gqvAA1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: S10_plectin | ECOD (1.6) |
| GB [auth AB] | Ribosomal_S17_1 | e6gqvAB1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosomal_S17_1 | ECOD (1.6) |
| F [auth A] | Ribosomal_L2_1 | e6gqvA2 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosomal_L2_1 | ECOD (1.6) |
| F [auth A] | Ribosomal_L2_C_2 | e6gqvA1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L2_C_2 | ECOD (1.6) |
| HB [auth AC] | Ribosomal_L7Ae | e6gqvAC1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: Ribosomal_L7Ae | ECOD (1.6) |
| IB [auth AD] | Ribosomal_S13_N | e6gqvAD2 | A: alpha arrays | X: HTH | H: 40S ribosomal protein S13 N-terminal domain (From Topology) | T: 40S ribosomal protein S13 N-terminal domain | F: Ribosomal_S13_N | ECOD (1.6) |
| IB [auth AD] | Ribosomal_S15_2 | e6gqvAD1 | A: alpha arrays | X: S15/NS1 RNA-binding domain (From Topology) | H: S15/NS1 RNA-binding domain (From Topology) | T: S15/NS1 RNA-binding domain | F: Ribosomal_S15_2 | ECOD (1.6) |
| JB [auth AE] | Ribosomal_S11 | e6gqvAE1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Ribosomal_S11 | ECOD (1.6) |
| KB [auth AF] | Ribosomal_S19 | e6gqvAF1 | A: a+b two layers | X: Ribosomal protein S19 (From Topology) | H: Ribosomal protein S19 (From Topology) | T: Ribosomal protein S19 | F: Ribosomal_S19 | ECOD (1.6) |
| LB [auth AG] | Ribosomal_S9 | e6gqvAG1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: Ribosomal_S9 | ECOD (1.6) |
| MB [auth AH] | Ribosomal_S17e | e6gqvAH1 | A: alpha arrays | X: HTH | H: HTH | T: FF domain | F: Ribosomal_S17e | ECOD (1.6) |
| NB [auth AI] | Ribosomal_S13 | e6gqvAI1 | A: alpha arrays | X: HhH/H2TH | H: H2TH (From Topology) | T: H2TH | F: Ribosomal_S13 | ECOD (1.6) |
| OB [auth AJ] | Ribosomal_S19e | e6gqvAJ1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: Ribosomal_S19e | ECOD (1.6) |
| PB [auth AK] | Ribosomal_S10_1 | e6gqvAK1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S10 (From Topology) | T: Ribosomal protein S10 | F: Ribosomal_S10_1 | ECOD (1.6) |
| QB [auth AL] | Ribosomal_S21e | e6gqvAL1 | A: a+b two layers | X: 40S ribosomal protein rpS21 (S21e) (From Topology) | H: 40S ribosomal protein rpS21 (S21e) (From Topology) | T: 40S ribosomal protein rpS21 (S21e) | F: Ribosomal_S21e | ECOD (1.6) |
| G [auth B] | Ribosomal_L3 | e6gqvB1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Ribosomal_L3 | ECOD (1.6) |
| RB [auth AM] | Ribosomal_S8_N_1 | e6gqvAM2 | A: a+b two layers | X: R3H domain-like | H: Ribosomal protein S8, N-terminal domain (From Topology) | T: Ribosomal protein S8, N-terminal domain | F: Ribosomal_S8_N_1 | ECOD (1.6) |
| RB [auth AM] | Ribosomal_S8_C_1 | e6gqvAM1 | A: a+b two layers | X: Ribosomal protein S8, C-terminal domain (From Topology) | H: Ribosomal protein S8, C-terminal domain (From Topology) | T: Ribosomal protein S8, C-terminal domain | F: Ribosomal_S8_C_1 | ECOD (1.6) |
| SB [auth AN] | Ribosom_S12_S23 | e6gqvAN1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosom_S12_S23 | ECOD (1.6) |
| TB [auth AO] | Ribosomal_S24e | e6gqvAO1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: Ribosomal_S24e | ECOD (1.6) |
| UB [auth AP] | Ribosomal_S25 | e6gqvAP1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: Ribosomal_S25 | ECOD (1.6) |
| VB [auth AQ] | Ribosomal_S26e | e6gqvAQ1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: Ribosomal_S26e | ECOD (1.6) |
| WB [auth AR] | Ribosomal_S27e | e6gqvAR1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_S27e | ECOD (1.6) |
| XB [auth AS] | Ribosomal_S28e | e6gqvAS1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: Ribosomal_S28e | ECOD (1.6) |
| YB [auth AT] | Ribosomal_S14_2 | e6gqvAT1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: Ribosomal_S14_2 | ECOD (1.6) |
| ZB [auth AU] | Ribosomal_S30 | e6gqvAU1 | A: extended segments | X: 40S ribosomal protein S30 (S30e) (From Topology) | H: 40S ribosomal protein S30 (S30e) (From Topology) | T: 40S ribosomal protein S30 (S30e) | F: Ribosomal_S30 | ECOD (1.6) |
| AC [auth AV] | ANAPC4_WD40_2 | e6gqvAV1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: ANAPC4_WD40_2 | ECOD (1.6) |
| H [auth C] | Ribosomal_L4 | e6gqvC3 | A: a/b three-layered sandwiches | X: Ribosomal protein L4 (From Topology) | H: Ribosomal protein L4 (From Topology) | T: Ribosomal protein L4 | F: Ribosomal_L4 | ECOD (1.6) |
| H [auth C] | Ribos_L4_asso_C | e6gqvC2 | A: extended segments | X: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology) | H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology) | T: C-terminal helical region in 60S ribosomal protein L4 (L4p) | F: Ribos_L4_asso_C | ECOD (1.6) |
| BC [auth AW] | Ribosomal_S27 | e6gqvAW1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_S27 | ECOD (1.6) |
| CC [auth AX] | GTP_EFTU_D2 | e6gqvAX4 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: GTP_EFTU_D2 | ECOD (1.6) |
| CC [auth AX] | EFG_IV | e6gqvAX6 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: EFG_IV | ECOD (1.6) |
| CC [auth AX] | EFG_C | e6gqvAX2 | A: a+b two layers | X: Alpha-beta plaits | H: EF-G C-terminal domain-like (From Topology) | T: EF-G C-terminal domain-like | F: EFG_C | ECOD (1.6) |
| CC [auth AX] | EFG_II | e6gqvAX5 | A: a+b two layers | X: Alpha-beta plaits | H: EF-G C-terminal domain-like (From Topology) | T: EF-G C-terminal domain-like | F: EFG_II | ECOD (1.6) |
| CC [auth AX] | MnmE_helical_2nd | e6gqvAX3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: MnmE_helical_2nd | ECOD (1.6) |
| FC [auth BA] | Ribosomal_L1_2nd_1 | e6gqvBA2 | A: a+b two layers | X: a+b domain in Ribosomal protein L1 (From Topology) | H: a+b domain in Ribosomal protein L1 (From Topology) | T: a+b domain in Ribosomal protein L1 | F: Ribosomal_L1_2nd_1 | ECOD (1.6) |
| FC [auth BA] | Ribosomal_L1_1st_1 | e6gqvBA1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Rossmann-like domain in Ribosomal protein L1 (From Topology) | T: Rossmann-like domain in Ribosomal protein L1 | F: Ribosomal_L1_1st_1 | ECOD (1.6) |
| I [auth D] | Ribosomal_L5e | e6gqvD1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Ribosomal_L5e | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| J [auth E] | PF01159 | Ribosomal protein L6e (Ribosomal_L6e) | Ribosomal protein L6e | - | Family |
| K [auth F] | PF08079 | Ribosomal L30 N-terminal domain (Ribosomal_L30_N) | Ribosomal L30 N-terminal domain | This presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1]. | Domain |
| K [auth F] | PF00327 | Ribosomal protein L30p/L7e (Ribosomal_L30) | Ribosomal protein L30p/L7e | This family includes prokaryotic L30 and eukaryotic L7. | Domain |
| L [auth G] | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain |
| M [auth H] | PF00347 | Ribosomal protein L6 (Ribosomal_L6) | Ribosomal protein L6 | - | Domain |
| N [auth I] | PF00252 | Ribosomal protein L16p/L10e (Ribosomal_L16) | Ribosomal protein L16p/L10e | - | Domain |
| O [auth J] | PF00281 | Ribosomal protein L5 (Ribosomal_L5) | Ribosomal protein L5 | - | Domain |
| O [auth J] | PF00673 | ribosomal L5P family C-terminus (Ribosomal_L5_C) | ribosomal L5P family C-terminus | This region is found associated with Pfam:PF00281. | Domain |
| P [auth L] | PF01294 | Ribosomal protein L13e (Ribosomal_L13e) | Ribosomal protein L13e | - | Family |
| Q [auth M] | PF01929 | Ribosomal protein L14 (Ribosomal_L14e) | Ribosomal protein L14 | - | Family |
| Q [auth M] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| R [auth N] | PF00827 | Ribosomal L15 (Ribosomal_L15e) | Ribosomal L15 | - | Family |
| S [auth O] | PF00572 | Ribosomal protein L13 (Ribosomal_L13) | Ribosomal protein L13 | - | Family |
| T [auth P] | PF00237 | Ribosomal protein L22p/L17e (Ribosomal_L22) | Ribosomal protein L22p/L17e | This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. | Domain |
| U [auth Q] | PF17135 | Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18) | Ribosomal protein 60S L18 and 50S L18e | - | Family |
| V [auth R] | PF01280 | Ribosomal protein L19e (Ribosomal_L19e) | Ribosomal protein L19e | - | Family |
| W [auth S] | PF01775 | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A) | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A | This family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A. | Domain |
| X [auth T] | PF01157 | Ribosomal protein L21e (Ribosomal_L21e) | Ribosomal protein L21e | - | Family |
| Y [auth U] | PF01776 | Ribosomal L22e protein family (Ribosomal_L22e) | Ribosomal L22e protein family | - | Family |
| Z [auth V] | PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | - | Domain |
| AA [auth W] | PF01246 | Ribosomal protein L24e (Ribosomal_L24e) | Ribosomal protein L24e | - | Domain |
| BA [auth X] | PF03939 | Ribosomal protein L23, N-terminal domain (Ribosomal_L23eN) | Ribosomal protein L23, N-terminal domain | - | Family |
| BA [auth X] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |
| CA [auth Y] | PF16906 | Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26) | Ribosomal proteins L26 eukaryotic, L24P archaeal | - | Family |
| CA [auth Y] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| DA [auth Z] | PF01777 | Ribosomal L27e protein family (Ribosomal_L27e) | Ribosomal L27e protein family | - | Family |
| EA [auth a] | PF00828 | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | - | Family |
| FA [auth b] | PF01779 | Ribosomal L29e protein family (Ribosomal_L29e) | Ribosomal L29e protein family | - | Family |
| GA [auth c] | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain |
| HA [auth d] | PF01198 | Ribosomal protein L31e (Ribosomal_L31e) | Ribosomal protein L31e | - | Family |
| IA [auth e] | PF01655 | Ribosomal protein L32 (Ribosomal_L32e) | Ribosomal protein L32 | - | Family |
| JA [auth f] | PF01247 | Ribosomal protein L35Ae (Ribosomal_L35Ae) | Ribosomal protein L35Ae | - | Domain |
| KA [auth g] | PF01199 | Ribosomal protein L34e (Ribosomal_L34e) | Ribosomal protein L34e | - | Family |
| LA [auth h] | PF00831 | Ribosomal L29 protein (Ribosomal_L29) | Ribosomal L29 protein | - | Family |
| MA [auth i] | PF01158 | Ribosomal protein L36e (Ribosomal_L36e) | Ribosomal protein L36e | - | Family |
| D [auth P0] | PF17777 | Insertion domain in 60S ribosomal protein L10P (RL10P_insert) | Insertion domain in 60S ribosomal protein L10P | This domain is found in prokaryotic and archaeal ribosomal L10 protein [1]. | Domain |
| D [auth P0] | PF00466 | Ribosomal protein L10 (Ribosomal_L10) | Ribosomal protein L10 | - | Family |
| NA [auth j] | PF01907 | Ribosomal protein L37e (Ribosomal_L37e) | Ribosomal protein L37e | - | Family |
| OA [auth k] | PF01781 | Ribosomal L38e protein family (Ribosomal_L38e) | Ribosomal L38e protein family | - | Family |
| PA [auth l] | PF00832 | Ribosomal L39 protein (Ribosomal_L39) | Ribosomal L39 protein | - | Family |
| QA [auth m] | PF01020 | Ribosomal L40e family (Ribosomal_L40e) | Ribosomal L40e family | - | Family |
| RA [auth n] | PF05162 | Ribosomal protein L41 (Ribosomal_L41) | Ribosomal protein L41 | - | Family |
| SA [auth o] | PF00935 | Ribosomal protein L44 (Ribosomal_L44) | Ribosomal protein L44 | - | Family |
| TA [auth p] | PF01780 | Ribosomal L37ae protein family (Ribosomal_L37ae) | Ribosomal L37ae protein family | - | Family |
| VA [auth q] | PF00318 | Ribosomal protein S2 (Ribosomal_S2) | Ribosomal protein S2 | - | Family |
| WA [auth r] | PF01015 | Ribosomal S3Ae family (Ribosomal_S3Ae) | Ribosomal S3Ae family | - | Family |
| E [auth P2] | PF03946 | Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N) | Ribosomal protein L11, N-terminal domain | The N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. | Domain |
| E [auth P2] | PF00298 | Ribosomal protein L11, RNA binding domain (Ribosomal_L11) | Ribosomal protein L11, RNA binding domain | - | Domain |
| XA [auth s] | PF03719 | Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) | Ribosomal protein S5, C-terminal domain | - | Domain |
| XA [auth s] | PF00333 | Ribosomal protein S5, N-terminal domain (Ribosomal_S5) | Ribosomal protein S5, N-terminal domain | - | Domain |
| YA [auth t] | PF07650 | KH domain (KH_2) | KH domain | - | Domain |
| YA [auth t] | PF00189 | Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) | Ribosomal protein S3, C-terminal domain | This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. | Domain |
| ZA [auth u] | PF00900 | Ribosomal family S4e (Ribosomal_S4e) | Ribosomal family S4e | - | Family |
| ZA [auth u] | PF16121 | 40S ribosomal protein S4 C-terminus (40S_S4_C) | 40S ribosomal protein S4 C-terminus | - | Family |
| ZA [auth u] | PF08071 | RS4NT (NUC023) domain (RS4NT) | RS4NT (NUC023) domain | This is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1]. | Domain |
| ZA [auth u] | PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain |
| ZA [auth u] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| AB [auth v] | PF00177 | Ribosomal protein S7p/S5e (Ribosomal_S7) | Ribosomal protein S7p/S5e | This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. | Domain |
| BB [auth w] | PF01092 | Ribosomal protein S6e (Ribosomal_S6e) | Ribosomal protein S6e | - | Family |
| CB [auth x] | PF01251 | Ribosomal protein S7e (Ribosomal_S7e) | Ribosomal protein S7e | - | Family |
| DB [auth y] | PF01201 | Ribosomal protein S8e (Ribosomal_S8e) | Ribosomal protein S8e | - | Family |
| EB [auth z] | PF00163 | Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4) | Ribosomal protein S4/S9 N-terminal domain | - | Family |
| EB [auth z] | PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain |
| FB [auth AA] | PF03501 | Plectin/S10 domain (S10_plectin) | Plectin/S10 domain | This presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding. | Domain |
| GB [auth AB] | PF00366 | Ribosomal protein S17 (Ribosomal_S17) | Ribosomal protein S17 | - | Domain |
| GB [auth AB] | PF16205 | Ribosomal_S17 N-terminal (Ribosomal_S17_N) | Ribosomal_S17 N-terminal | - | Family |
| F [auth A] | PF03947 | Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) | Ribosomal Proteins L2, C-terminal domain | - | Domain |
| F [auth A] | PF00181 | Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2) | Ribosomal Proteins L2, RNA binding domain | - | Domain |
| HB [auth AC] | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain |
| IB [auth AD] | PF08069 | Ribosomal S13/S15 N-terminal domain (Ribosomal_S13_N) | Ribosomal S13/S15 N-terminal domain | This domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1]. | Domain |
| IB [auth AD] | PF00312 | Ribosomal protein S15 (Ribosomal_S15) | Ribosomal protein S15 | - | Domain |
| JB [auth AE] | PF00411 | Ribosomal protein S11 (Ribosomal_S11) | Ribosomal protein S11 | - | Family |
| KB [auth AF] | PF00203 | Ribosomal protein S19 (Ribosomal_S19) | Ribosomal protein S19 | - | Domain |
| LB [auth AG] | PF00380 | Ribosomal protein S9/S16 (Ribosomal_S9) | Ribosomal protein S9/S16 | - | Family |
| MB [auth AH] | PF00833 | Ribosomal S17 (Ribosomal_S17e) | Ribosomal S17 | - | Family |
| NB [auth AI] | PF00416 | Ribosomal protein S13/S18 (Ribosomal_S13) | Ribosomal protein S13/S18 | - | Family |
| OB [auth AJ] | PF01090 | Ribosomal protein S19e (Ribosomal_S19e) | Ribosomal protein S19e | - | Family |
| PB [auth AK] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |
| QB [auth AL] | PF01249 | Ribosomal protein S21e (Ribosomal_S21e) | Ribosomal protein S21e | - | Family |
| G [auth B] | PF00297 | Ribosomal protein L3 (Ribosomal_L3) | Ribosomal protein L3 | - | Family |
| RB [auth AM] | PF00410 | Ribosomal protein S8 (Ribosomal_S8) | Ribosomal protein S8 | - | Domain |
| SB [auth AN] | PF00164 | Ribosomal protein S12/S23 (Ribosom_S12_S23) | Ribosomal protein S12/S23 | - | Family |
| TB [auth AO] | PF01282 | Ribosomal protein S24e (Ribosomal_S24e) | Ribosomal protein S24e | - | Family |
| UB [auth AP] | PF03297 | S25 ribosomal protein (Ribosomal_S25) | S25 ribosomal protein | - | Family |
| VB [auth AQ] | PF01283 | Ribosomal protein S26e (Ribosomal_S26e) | Ribosomal protein S26e | - | Family |
| WB [auth AR] | PF01667 | Ribosomal protein S27 (Ribosomal_S27e) | Ribosomal protein S27 | - | Family |
| XB [auth AS] | PF01200 | Ribosomal protein S28e (Ribosomal_S28e) | Ribosomal protein S28e | - | Family |
| YB [auth AT] | PF00253 | Ribosomal protein S14p/S29e (Ribosomal_S14) | Ribosomal protein S14p/S29e | - | Family |
| ZB [auth AU] | PF04758 | Ribosomal protein S30 (Ribosomal_S30) | Ribosomal protein S30 | - | Family |
| AC [auth AV] | PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |
| H [auth C] | PF14374 | 60S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C) | 60S ribosomal protein L4 C-terminal domain | This family is found at the very C-terminal of 60 ribosomal L4 proteins. | Domain |
| H [auth C] | PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family |
| BC [auth AW] | PF01599 | Ribosomal protein S27a (Ribosomal_S27) | Ribosomal protein S27a | This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ... | Domain |
| CC [auth AX] | PF00679 | Elongation factor G C-terminus (EFG_C) | Elongation factor G C-terminus | This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold. | Domain |
| CC [auth AX] | PF00009 | Elongation factor Tu GTP binding domain (GTP_EFTU) | Elongation factor Tu GTP binding domain | This domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. | Domain |
| CC [auth AX] | PF14492 | Elongation Factor G, domain III (EFG_III) | Elongation Factor G, domain III | This domain is found in Elongation Factor G. It shares a similar structure with domain V (Pfam:PF00679). Structural studies in drosophila indicate this is domain 3 [1]. | Domain |
| CC [auth AX] | PF03144 | Elongation factor Tu domain 2 (GTP_EFTU_D2) | Elongation factor Tu domain 2 | Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as e ... | Domain |
| CC [auth AX] | PF03764 | Elongation factor G, domain IV (EFG_IV) | Elongation factor G, domain IV | This domain is found in elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopts a ribosomal protein S5 domain 2-like fold. | Domain |
| FC [auth BA] | PF00687 | Ribosomal protein L1p/L10e family (Ribosomal_L1) | Ribosomal protein L1p/L10e family | This family includes prokaryotic L1 and eukaryotic L10. | Domain |
| I [auth D] | PF17144 | Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e) | Ribosomal large subunit proteins 60S L5, and 50S L18 | - | Family |
| I [auth D] | PF14204 | Ribosomal L18 C-terminal region (Ribosomal_L18_c) | Ribosomal L18 C-terminal region | This domain is the C-terminal end of ribosomal L18/L5 proteins. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Protein Modification Annotation
| Modified Residue(s) | ||
|---|---|---|
| Chain | Residue(s) | Description |
| CC [auth AX] | DDE | Parent Component: HIS : AA0040 : 2'-[3-carboxamido-3-(trimethylammonio)propyl]-L-histidine MOD:00049 |
