5ZBU
Crystal Structure of PA-TM-RING E3 ligase RNF13 RING domain in complex with E2~Ub
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth C] | UQ_con | e5zbuC1 | A: a+b two layers | X: UBC-like | H: UBC-like (From Topology) | T: UBC-like | F: UQ_con | ECOD (1.6) |
B | UQ_con | e5zbuB1 | A: a+b two layers | X: UBC-like | H: UBC-like (From Topology) | T: UBC-like | F: UQ_con | ECOD (1.6) |
C [auth A] | zf-RING_2 | e5zbuA1 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: zf-RING_2 | ECOD (1.6) |
D | zf-RING_2 | e5zbuD1 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: zf-RING_2 | ECOD (1.6) |
E | ubiquitin_1 | e5zbuE1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ubiquitin_1 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth C], B | PF00179 | Ubiquitin-conjugating enzyme (UQ_con) | Ubiquitin-conjugating enzyme | Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cystein ... | Domain |
C [auth A], D | PF13639 | Ring finger domain (zf-RING_2) | Ring finger domain | - | Domain |
PF00240 | Ubiquitin family (ubiquitin) | Ubiquitin family | This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth C], B | IPR000608 | Ubiquitin-conjugating enzyme E2 | Domain |
A [auth C], B | IPR016135 | Ubiquitin-conjugating enzyme/RWD-like | Homologous Superfamily |
A [auth C], B | IPR023313 | Ubiquitin-conjugating enzyme, active site | Active Site |
C [auth A], D | IPR046450 | PA domain superfamily | Homologous Superfamily |
C [auth A], D | IPR013083 | Zinc finger, RING/FYVE/PHD-type | Homologous Superfamily |
C [auth A], D | IPR044744 | ZNRF4 /RNF13/RNF167, PA domain | Domain |
C [auth A], D | IPR003137 | PA domain | Domain |
C [auth A], D | IPR001841 | Zinc finger, RING-type | Domain |
IPR019954 | Ubiquitin conserved site | Conserved Site | |
IPR000626 | Ubiquitin-like domain | Domain | |
IPR019956 | Ubiquitin domain | Domain | |
IPR029071 | Ubiquitin-like domain superfamily | Homologous Superfamily |
Pharos: Disease Associations Pharos Homepage Annotation
Chains | Drug Target   | Associated Disease |
---|---|---|
A [auth C], B | P62837 | : |
C [auth A], D | O43567 | : |
P0CG47 | :