5Y6L

A subcomplex crystal structure of human cytosolic aspartyl-tRNA synthetase and heterotetrameric glutathione transferase-homology domains in multi-tRNA synthetase complex


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AGST_C_3_2e5y6lA1 A: alpha superhelicesX: Repetitive alpha hairpinsH: Glutathione S-transferase (GST)-C (From Topology)T: Glutathione S-transferase (GST)-CF: GST_C_3_2ECOD (1.6)
BGST_C_3e5y6lB1 A: alpha superhelicesX: Repetitive alpha hairpinsH: Glutathione S-transferase (GST)-C (From Topology)T: Glutathione S-transferase (GST)-CF: GST_C_3ECOD (1.6)
CGST_C_3e5y6lC1 A: alpha superhelicesX: Repetitive alpha hairpinsH: Glutathione S-transferase (GST)-C (From Topology)T: Glutathione S-transferase (GST)-CF: GST_C_3ECOD (1.6)
DGST_C_3e5y6lD2 A: alpha superhelicesX: Repetitive alpha hairpinsH: Glutathione S-transferase (GST)-C (From Topology)T: Glutathione S-transferase (GST)-CF: GST_C_3ECOD (1.6)
DEUF08524e5y6lD1 A: a+b three layersX: Thioredoxin-likeH: Thioredoxin-like (From Topology)T: Thioredoxin-likeF: EUF08524ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF18485Glutathione S-transferase, N-terminal domain (GST_N_5)Glutathione S-transferase, N-terminal domainThis is the N-terminal (GST-N) domain containing a thioredoxin fold. This domain found in methionyl-tRNA synthetase (MRS), a multi-tRNA synthetase complex (MSC) component [1].Domain
PF00043Glutathione S-transferase, C-terminal domain (GST_C)Glutathione S-transferase, C-terminal domainGST conjugates reduced glutathione to a variety of targets including S-crystallin from squid, the eukaryotic elongation factor 1-gamma, the HSP26 family of stress-related proteins and auxin-regulated proteins in plants. Stringent starvation proteins ...GST conjugates reduced glutathione to a variety of targets including S-crystallin from squid, the eukaryotic elongation factor 1-gamma, the HSP26 family of stress-related proteins and auxin-regulated proteins in plants. Stringent starvation proteins in E. coli are also included in the alignment but are not known to have GST activity. The glutathione molecule binds in a cleft between N and C-terminal domains. The catalytically important residues are proposed to reside in the N-terminal domain [1]. In plants, GSTs are encoded by a large gene family (48 GST genes in Arabidopsis) and can be divided into the phi, tau, theta, zeta, and lambda classes [2].
Domain
PF00043Glutathione S-transferase, C-terminal domain (GST_C)Glutathione S-transferase, C-terminal domainGST conjugates reduced glutathione to a variety of targets including S-crystallin from squid, the eukaryotic elongation factor 1-gamma, the HSP26 family of stress-related proteins and auxin-regulated proteins in plants. Stringent starvation proteins ...GST conjugates reduced glutathione to a variety of targets including S-crystallin from squid, the eukaryotic elongation factor 1-gamma, the HSP26 family of stress-related proteins and auxin-regulated proteins in plants. Stringent starvation proteins in E. coli are also included in the alignment but are not known to have GST activity. The glutathione molecule binds in a cleft between N and C-terminal domains. The catalytically important residues are proposed to reside in the N-terminal domain [1]. In plants, GSTs are encoded by a large gene family (48 GST genes in Arabidopsis) and can be divided into the phi, tau, theta, zeta, and lambda classes [2].
Domain
PF18569Thioredoxin-like domain (Thioredoxin_16)Thioredoxin-like domainThis is a thioredoxin like domain found in AIMP2 proteins (Aminoacyl tRNA synthetase complex interacting multifunctional protein 2). Aimp2 is a component of human multi-tRNA synthetase complex (MSC). MSC is a macromolecular protein complex consisting ...This is a thioredoxin like domain found in AIMP2 proteins (Aminoacyl tRNA synthetase complex interacting multifunctional protein 2). Aimp2 is a component of human multi-tRNA synthetase complex (MSC). MSC is a macromolecular protein complex consisting of nine different ARSs and three ARS-interacting multifunctional proteins (AIMPs) [1].
Domain
PF00043Glutathione S-transferase, C-terminal domain (GST_C)Glutathione S-transferase, C-terminal domainGST conjugates reduced glutathione to a variety of targets including S-crystallin from squid, the eukaryotic elongation factor 1-gamma, the HSP26 family of stress-related proteins and auxin-regulated proteins in plants. Stringent starvation proteins ...GST conjugates reduced glutathione to a variety of targets including S-crystallin from squid, the eukaryotic elongation factor 1-gamma, the HSP26 family of stress-related proteins and auxin-regulated proteins in plants. Stringent starvation proteins in E. coli are also included in the alignment but are not known to have GST activity. The glutathione molecule binds in a cleft between N and C-terminal domains. The catalytically important residues are proposed to reside in the N-terminal domain [1]. In plants, GSTs are encoded by a large gene family (48 GST genes in Arabidopsis) and can be divided into the phi, tau, theta, zeta, and lambda classes [2].
Domain
PF00152tRNA synthetases class II (D, K and N) (tRNA-synt_2)tRNA synthetases class II (D, K and N)- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Methionine--tRNA ligase, cytoplasmic
Eukaryotic translation elongation factor 1 epsilon-1-
Bifunctional glutamate/proline--tRNA ligase
Aminoacyl tRNA synthase complex-interacting multifunctional protein 2
Aspartate--tRNA ligase, cytoplasmic

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR004046Glutathione S-transferase, C-terminalDomain
IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
IPR041872Methionyl-tRNA synthetase, anticodon-binding domainDomain
IPR010987Glutathione S-transferase, C-terminal-likeDomain
IPR001412Aminoacyl-tRNA synthetase, class I, conserved siteConserved Site
IPR015413Methionyl/Leucyl tRNA synthetaseDomain
IPR014729Rossmann-like alpha/beta/alpha sandwich foldHomologous Superfamily
IPR009080Aminoacyl-tRNA synthetase, class Ia, anticodon-bindingHomologous Superfamily
IPR033911Methioninyl-tRNA synthetase core domainDomain
IPR029038Methionyl-tRNA synthetase, Zn-domainHomologous Superfamily
IPR000738WHEP-TRS domainDomain
IPR023458Methionine-tRNA ligase, type 1Family
IPR041598Methionine--tRNA ligase, N-terminalDomain
IPR014758Methionyl-tRNA synthetaseFamily
IPR036282Glutathione S-transferase, C-terminal domain superfamilyHomologous Superfamily
IPR042450Eukaryotic translation elongation factor 1 epsilon-1Family
IPR004046Glutathione S-transferase, C-terminalDomain
IPR010987Glutathione S-transferase, C-terminal-likeDomain
IPR036282Glutathione S-transferase, C-terminal domain superfamilyHomologous Superfamily
IPR045864Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)Homologous Superfamily
IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
IPR001412Aminoacyl-tRNA synthetase, class I, conserved siteConserved Site
IPR004154Anticodon-bindingDomain
IPR014729Rossmann-like alpha/beta/alpha sandwich foldHomologous Superfamily
IPR006195Aminoacyl-tRNA synthetase, class IIDomain
IPR002314Aminoacyl-tRNA synthetase, class II (G/ P/ S/T)Domain
IPR036621Anticodon-binding domain superfamilyHomologous Superfamily
IPR004499Proline-tRNA ligase, class IIa, archaeal-typeFamily
IPR000738WHEP-TRS domainDomain
IPR004526Glutamyl-tRNA synthetase, archaeal/eukaryotic cytosolicFamily
IPR000924Glutamyl/glutaminyl-tRNA synthetaseFamily
IPR020058Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domainDomain
IPR017449Prolyl-tRNA synthetase, class IIHomologous Superfamily
IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
IPR049437tRNA synthetases class I (E and Q), anti-codon binding domainDomain
IPR020059Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domainDomain
IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
IPR033721Prolyl-tRNA synthetase, catalytic domainDomain
IPR036282Glutathione S-transferase, C-terminal domain superfamilyHomologous Superfamily
IPR016061Proline-tRNA ligase, class II, C-terminalDomain
IPR031889AIMP2, lysyl-tRNA synthetase binding domainDomain
IPR004046Glutathione S-transferase, C-terminalDomain
IPR042360Aminoacyl tRNA synthase complex-interacting multifunctional protein 2Family
IPR041503AIMP2, thioredoxin-like domainDomain
IPR036282Glutathione S-transferase, C-terminal domain superfamilyHomologous Superfamily
IPR045864Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)Homologous Superfamily
IPR002312Aspartyl/Asparaginyl-tRNA synthetase, class IIbFamily
IPR004523Aspartate-tRNA synthetase, type 2Family
IPR004365OB-fold nucleic acid binding domain, AA-tRNA synthetase-typeDomain
IPR006195Aminoacyl-tRNA synthetase, class IIDomain
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IPR004364Aminoacyl-tRNA synthetase, class II (D/K/N)Domain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosP56192
PharosO43324
PharosP07814
PharosQ13155
PharosP14868