5T15

Structural basis for gating and activation of RyR1 (30 uM Ca2+ dataset, all particles)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth F]SCOP2B SuperfamilyRotamase-like8034864 3000622 SCOP2B (2022-06-29)
B [auth A]SCOP2B SuperfamilyRotamase-like8034864 3000622 SCOP2B (2022-06-29)
C [auth H]SCOP2B SuperfamilyRotamase-like8034864 3000622 SCOP2B (2022-06-29)
D [auth J]SCOP2B SuperfamilyRotamase-like8034864 3000622 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth F]FKBP_Ce5t15F1 A: a+b two layersX: FKBP-likeH: FKBP-likeT: FKBP-likeF: FKBP_CECOD (1.6)
B [auth A]FKBP_Ce5t15A1 A: a+b two layersX: FKBP-likeH: FKBP-likeT: FKBP-likeF: FKBP_CECOD (1.6)
C [auth H]FKBP_Ce5t15H1 A: a+b two layersX: FKBP-likeH: FKBP-likeT: FKBP-likeF: FKBP_CECOD (1.6)
D [auth J]FKBP_Ce5t15J1 A: a+b two layersX: FKBP-likeH: FKBP-likeT: FKBP-likeF: FKBP_CECOD (1.6)
E [auth B]SPRYe5t15B8 A: beta sandwichesX: jelly-rollH: Concanavalin A-likeT: Concanavalin A-like lectins/glucanasesF: SPRYECOD (1.6)
E [auth B]Ins145_P3_rece5t15B10 A: beta duplicates or obligate multimersX: beta-Trefoil (From Topology)H: beta-Trefoil (From Topology)T: beta-TrefoilF: Ins145_P3_recECOD (1.6)
E [auth B]MIRe5t15B9 A: beta duplicates or obligate multimersX: beta-Trefoil (From Topology)H: beta-Trefoil (From Topology)T: beta-TrefoilF: MIRECOD (1.6)
E [auth B]EF-hand_8e5t15B12 A: alpha arraysX: EF-handH: EF-hand-relatedT: EF-handF: EF-hand_8ECOD (1.6)
E [auth B]RyRe5t15B6 A: alpha duplicates or obligate multimersX: RyR motifs (From Topology)H: RyR motifs (From Topology)T: RyR motifsF: RyRECOD (1.6)
E [auth B]RIH_assoce5t15B2 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: RIH_assocECOD (1.6)
E [auth B]KOG2243e5t15B4 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: KOG2243ECOD (1.6)
E [auth B]RYDR_ITPR_1e5t15B5 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: RYDR_ITPR_1ECOD (1.6)
E [auth B]RYDR_ITPRe5t15B3 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: RYDR_ITPRECOD (1.6)
E [auth B]RR_TM4-6e5t15B1 A: alpha complex topologyX: Voltage-gated ion channels (From Topology)H: Voltage-gated ion channels (From Topology)T: Voltage-gated ion channelsF: RR_TM4-6ECOD (1.6)
F [auth E]SPRYe5t15E8 A: beta sandwichesX: jelly-rollH: Concanavalin A-likeT: Concanavalin A-like lectins/glucanasesF: SPRYECOD (1.6)
F [auth E]Ins145_P3_rece5t15E10 A: beta duplicates or obligate multimersX: beta-Trefoil (From Topology)H: beta-Trefoil (From Topology)T: beta-TrefoilF: Ins145_P3_recECOD (1.6)
F [auth E]MIRe5t15E9 A: beta duplicates or obligate multimersX: beta-Trefoil (From Topology)H: beta-Trefoil (From Topology)T: beta-TrefoilF: MIRECOD (1.6)
F [auth E]EF-hand_8e5t15E12 A: alpha arraysX: EF-handH: EF-hand-relatedT: EF-handF: EF-hand_8ECOD (1.6)
F [auth E]RyRe5t15E6 A: alpha duplicates or obligate multimersX: RyR motifs (From Topology)H: RyR motifs (From Topology)T: RyR motifsF: RyRECOD (1.6)
F [auth E]RIH_assoce5t15E2 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: RIH_assocECOD (1.6)
F [auth E]KOG2243e5t15E4 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: KOG2243ECOD (1.6)
F [auth E]RYDR_ITPR_1e5t15E5 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: RYDR_ITPR_1ECOD (1.6)
F [auth E]RYDR_ITPRe5t15E3 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: RYDR_ITPRECOD (1.6)
F [auth E]RR_TM4-6e5t15E1 A: alpha complex topologyX: Voltage-gated ion channels (From Topology)H: Voltage-gated ion channels (From Topology)T: Voltage-gated ion channelsF: RR_TM4-6ECOD (1.6)
G [auth I]SPRYe5t15I8 A: beta sandwichesX: jelly-rollH: Concanavalin A-likeT: Concanavalin A-like lectins/glucanasesF: SPRYECOD (1.6)
G [auth I]Ins145_P3_rece5t15I10 A: beta duplicates or obligate multimersX: beta-Trefoil (From Topology)H: beta-Trefoil (From Topology)T: beta-TrefoilF: Ins145_P3_recECOD (1.6)
G [auth I]MIRe5t15I9 A: beta duplicates or obligate multimersX: beta-Trefoil (From Topology)H: beta-Trefoil (From Topology)T: beta-TrefoilF: MIRECOD (1.6)
G [auth I]EF-hand_8e5t15I12 A: alpha arraysX: EF-handH: EF-hand-relatedT: EF-handF: EF-hand_8ECOD (1.6)
G [auth I]RyRe5t15I6 A: alpha duplicates or obligate multimersX: RyR motifs (From Topology)H: RyR motifs (From Topology)T: RyR motifsF: RyRECOD (1.6)
G [auth I]RIH_assoce5t15I2 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: RIH_assocECOD (1.6)
G [auth I]KOG2243e5t15I4 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: KOG2243ECOD (1.6)
G [auth I]RYDR_ITPR_1e5t15I5 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: RYDR_ITPR_1ECOD (1.6)
G [auth I]RYDR_ITPRe5t15I3 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: RYDR_ITPRECOD (1.6)
G [auth I]RR_TM4-6e5t15I1 A: alpha complex topologyX: Voltage-gated ion channels (From Topology)H: Voltage-gated ion channels (From Topology)T: Voltage-gated ion channelsF: RR_TM4-6ECOD (1.6)
H [auth G]SPRYe5t15G8 A: beta sandwichesX: jelly-rollH: Concanavalin A-likeT: Concanavalin A-like lectins/glucanasesF: SPRYECOD (1.6)
H [auth G]Ins145_P3_rece5t15G10 A: beta duplicates or obligate multimersX: beta-Trefoil (From Topology)H: beta-Trefoil (From Topology)T: beta-TrefoilF: Ins145_P3_recECOD (1.6)
H [auth G]MIRe5t15G9 A: beta duplicates or obligate multimersX: beta-Trefoil (From Topology)H: beta-Trefoil (From Topology)T: beta-TrefoilF: MIRECOD (1.6)
H [auth G]EF-hand_8e5t15G12 A: alpha arraysX: EF-handH: EF-hand-relatedT: EF-handF: EF-hand_8ECOD (1.6)
H [auth G]RyRe5t15G6 A: alpha duplicates or obligate multimersX: RyR motifs (From Topology)H: RyR motifs (From Topology)T: RyR motifsF: RyRECOD (1.6)
H [auth G]RIH_assoce5t15G2 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: RIH_assocECOD (1.6)
H [auth G]KOG2243e5t15G4 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: KOG2243ECOD (1.6)
H [auth G]RYDR_ITPR_1e5t15G5 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: RYDR_ITPR_1ECOD (1.6)
H [auth G]RYDR_ITPRe5t15G3 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: RYDR_ITPRECOD (1.6)
H [auth G]RR_TM4-6e5t15G1 A: alpha complex topologyX: Voltage-gated ion channels (From Topology)H: Voltage-gated ion channels (From Topology)T: Voltage-gated ion channelsF: RR_TM4-6ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth F],
B [auth A],
C [auth H],
D [auth J]
PF00254FKBP-type peptidyl-prolyl cis-trans isomerase (FKBP_C)FKBP-type peptidyl-prolyl cis-trans isomerase- Domain
E [auth B],
F [auth E],
G [auth I],
H [auth G]
PF00622SPRY domain (SPRY)SPRY domain- Family
E [auth B],
F [auth E],
G [auth I],
H [auth G]
PF08454RyR and IP3R Homology associated (RIH_assoc)RyR and IP3R Homology associated- Repeat
E [auth B],
F [auth E],
G [auth I],
H [auth G]
PF02815MIR domain (MIR)MIR domainThe MIR (protein mannosyltransferase, IP3R and RyR) domain is a domain that may have a ligand transferase function [1].Domain
E [auth B],
F [auth E],
G [auth I],
H [auth G]
PF08709Inositol 1,4,5-trisphosphate/ryanodine receptor (Ins145_P3_rec)Inositol 1,4,5-trisphosphate/ryanodine receptorThis domain corresponds to the ligand binding region on inositol 1,4,5-trisphosphate receptor, and the N terminal region of the ryanodine receptor. Both receptors are involved in Ca2+ release. They can couple to the activation of neurotransmitter-ga ...This domain corresponds to the ligand binding region on inositol 1,4,5-trisphosphate receptor, and the N terminal region of the ryanodine receptor. Both receptors are involved in Ca2+ release. They can couple to the activation of neurotransmitter-gated receptors and voltage-gated Ca2+ channels on the plasma membrane, thus allowing the endoplasmic reticulum discriminate between different types of neuronal activity [1].
Domain
E [auth B],
F [auth E],
G [auth I],
H [auth G]
PF21119Ryanodine receptor junctional solenoid repeat (RYDR_Jsol)Ryanodine receptor junctional solenoid repeatThis entry represents a region of the Ryanodine receptor composed of alpha helical ARM repeats [1]. This region has been termed the Junctional solenoid region (Jsol) [1].Domain
E [auth B],
F [auth E],
G [auth I],
H [auth G]
PF01365RIH domain (RYDR_ITPR)RIH domain- Repeat
E [auth B],
F [auth E],
G [auth I],
H [auth G]
PF02026RyR domain (RyR)RyR domain- Family
E [auth B],
F [auth E],
G [auth I],
H [auth G]
PF00520Ion transport protein (Ion_trans)Ion transport protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth F],
B [auth A],
C [auth H],
D [auth J]
Peptidyl-prolyl cis-trans isomerase FKBP1B
E [auth B],
F [auth E],
G [auth I],
H [auth G]
Ryanodine receptor 1,Ryanodine receptor 1,Ryanodine receptor 1,Ryanodine receptor 1,Ryanodine receptor 1,Ryanodine receptor 1,Ryanodine receptor 1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth F],
B [auth A],
C [auth H],
D [auth J]
IPR046357Peptidyl-prolyl cis-trans isomerase domain superfamilyHomologous Superfamily
A [auth F],
B [auth A],
C [auth H],
D [auth J]
IPR001179FKBP-type peptidyl-prolyl cis-trans isomerase domainDomain
E [auth B],
F [auth E],
G [auth I],
H [auth G]
IPR036300Mir domain superfamilyHomologous Superfamily
E [auth B],
F [auth E],
G [auth I],
H [auth G]
IPR000699RIH domainDomain
E [auth B],
F [auth E],
G [auth I],
H [auth G]
IPR013662RyR/IP3R Homology associated domainDomain
E [auth B],
F [auth E],
G [auth I],
H [auth G]
IPR016093MIR motifDomain
E [auth B],
F [auth E],
G [auth I],
H [auth G]
IPR013320Concanavalin A-like lectin/glucanase domain superfamilyHomologous Superfamily
E [auth B],
F [auth E],
G [auth I],
H [auth G]
IPR003877SPRY domainDomain
E [auth B],
F [auth E],
G [auth I],
H [auth G]
IPR001870B30.2/SPRY domainDomain
E [auth B],
F [auth E],
G [auth I],
H [auth G]
IPR009460Ryanodine Receptor TM 4-6Domain
E [auth B],
F [auth E],
G [auth I],
H [auth G]
IPR015925Ryanodine/Inositol 1,4,5-trisphosphate receptorFamily
E [auth B],
F [auth E],
G [auth I],
H [auth G]
IPR048581Ryanodine receptor, junctional solenoid domainDomain
E [auth B],
F [auth E],
G [auth I],
H [auth G]
IPR035910RyR/IP3 receptor binding core, RIH domain superfamilyHomologous Superfamily
E [auth B],
F [auth E],
G [auth I],
H [auth G]
IPR003032Ryanodine receptor RyrDomain
E [auth B],
F [auth E],
G [auth I],
H [auth G]
IPR035761Ryanodine receptor, SPRY domain 1Domain
E [auth B],
F [auth E],
G [auth I],
H [auth G]
IPR014821Inositol 1,4,5-trisphosphate/ryanodine receptorDomain
E [auth B],
F [auth E],
G [auth I],
H [auth G]
IPR035764Ryanodine receptor, SPRY domain 2Domain
E [auth B],
F [auth E],
G [auth I],
H [auth G]
IPR013333Ryanodine receptorFamily
E [auth B],
F [auth E],
G [auth I],
H [auth G]
IPR043136B30.2/SPRY domain superfamilyHomologous Superfamily
E [auth B],
F [auth E],
G [auth I],
H [auth G]
IPR011992EF-hand domain pairHomologous Superfamily
E [auth B],
F [auth E],
G [auth I],
H [auth G]
IPR005821Ion transport domainDomain
E [auth B],
F [auth E],
G [auth I],
H [auth G]
IPR035762Ryanodine receptor, SPRY domain 3Domain