5PZL

CRYSTAL STRUCTURE OF THE HEPATITIS C VIRUS NS5B RNA-DEPENDENT RNA POLYMERASE IN COMPLEX WITH 2-({3-[1-(2-CYCLOPROPYLETHYL)-6-FLUORO-4-HYDROXY-2-OXO-1,2-DIHYDROQUINOLIN-3-YL]-1,1-DIOXO-1,4-DIHYDRO-1LAMBDA~6~,2,4-BENZOTHIADIAZIN-7-YL}OXY)ACETAMIDE


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF00998e5pzlA2 A: alpha bundlesX: helical bundle domain in reverse transcriptase-like polymerases (From Topology)H: helical bundle domain in reverse transcriptase-like polymerases (From Topology)T: helical bundle domain in reverse transcriptase-like polymerasesF: PF00998ECOD (1.6)
APF00998e5pzlA1 A: a+b two layersX: Alpha-beta plaitsH: Adenylyl and guanylyl cyclase catalytic domain-likeT: Adenylyl and guanylyl cyclase catalytic domain-likeF: PF00998ECOD (1.6)
BPF00998e5pzlB2 A: alpha bundlesX: helical bundle domain in reverse transcriptase-like polymerases (From Topology)H: helical bundle domain in reverse transcriptase-like polymerases (From Topology)T: helical bundle domain in reverse transcriptase-like polymerasesF: PF00998ECOD (1.6)
BPF00998e5pzlB1 A: a+b two layersX: Alpha-beta plaitsH: Adenylyl and guanylyl cyclase catalytic domain-likeT: Adenylyl and guanylyl cyclase catalytic domain-likeF: PF00998ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF00998Viral RNA dependent RNA polymerase (RdRP_3)Viral RNA dependent RNA polymerase- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
RNA-directed RNA polymerase

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR002522Hepatitis C virus, Core protein, N-terminalDomain
A, B
IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
A, B
IPR038568Hepatitis C virus NS5A, 1B domain superfamilyHomologous Superfamily
A, B
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
A, B
IPR009003Peptidase S1, PA clanHomologous Superfamily
A, B
IPR001650Helicase, C-terminal domain-likeDomain
A, B
IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
A, B
IPR002868Hepatitis C virus, Non-structural 5a proteinDomain
A, B
IPR038170NS5A domain 1a superfamilyHomologous Superfamily
A, B
IPR002518Hepatitis C virus, Non-structural protein NS2Domain
A, B
IPR013192Hepatitis C virus, Non-structural 5a protein, domain 1aDomain
A, B
IPR002521Hepatitis C virus, Core protein, C-terminalDomain
A, B
IPR042209Hepatitis C virus non-structural protein NS2, N-terminal domainHomologous Superfamily
A, B
IPR000745Hepatitis C virus, Non-structural protein NS4aDomain
A, B
IPR011492Non-structural protein NS3-like, DEAD box helicase, flavivirusDomain
A, B
IPR042205Hepatitis C virus non-structural protein NS2, C-terminal domainHomologous Superfamily
A, B
IPR002166RNA dependent RNA polymerase, hepatitis C virusFamily
A, B
IPR002519Hepatitis C virus, Envelope glycoprotein E1Domain
A, B
IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
A, B
IPR044896Hepatitis C virus core protein, chain A superfamilyHomologous Superfamily
A, B
IPR024350Hepatitus C virus, Non-structural 5a protein, C-terminalDomain
A, B
IPR013193Hepatitis C virus non-structural 5a, 1B domainDomain
A, B
IPR004109Hepatitis C virus, NS3 proteaseDomain
A, B
IPR002531Hepatitis C virus, Non-structural protein E2/NS1Domain
A, B
IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
A, B
IPR007094RNA-directed RNA polymerase, catalytic domainDomain
A, B
IPR001490Hepatitis C virus, Non-structural protein NS4bDomain