Annotations: 5HOG

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Mcl1_mid	e5hogA2	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 6-bladed	F: Mcl1_mid	ECOD (1.6)
A	KOG1274_1	e5hogA1	A: alpha superhelices	X: Repetitive alpha hairpins	H: DNA polymerase alpha-binding protein Ctf4 C-terminal domain (From Topology)	T: DNA polymerase alpha-binding protein Ctf4 C-terminal domain	F: KOG1274_1	ECOD (1.6)
B	Mcl1_mid	e5hogB2	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 6-bladed	F: Mcl1_mid	ECOD (1.6)
B	KOG1274_1	e5hogB1	A: alpha superhelices	X: Repetitive alpha hairpins	H: DNA polymerase alpha-binding protein Ctf4 C-terminal domain (From Topology)	T: DNA polymerase alpha-binding protein Ctf4 C-terminal domain	F: KOG1274_1	ECOD (1.6)
C	Mcl1_mid	e5hogC1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 6-bladed	F: Mcl1_mid	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C	PF12341	Minichromosome loss protein, Mcl1, middle region (Mcl1_mid)	Minichromosome loss protein, Mcl1, middle region	-	Repeat
A, B, C	PF20946	DNA polymerase alpha-binding protein Ctf4, C-terminal domain (Ctf4_C)	DNA polymerase alpha-binding protein Ctf4, C-terminal domain	This domain is found at the C-terminal end of DNA polymerase alpha- binding protein Ctf4 from yeast, its human orthologue AND1, and similar proteins from eukaryotes. This accessory factor for DNA replication plays a role in accurately duplicating the ...	This domain is found at the C-terminal end of DNA polymerase alpha- binding protein Ctf4 from yeast, its human orthologue AND1, and similar proteins from eukaryotes. This accessory factor for DNA replication plays a role in accurately duplicating the genome in vivo. This domain folds into a helical extension that is linked to the beta-propeller domain (Pfam:PF12341) and protrudes from one face of the disk-shaped trimer formed by the protein. It is essential for binding of dynamic partner proteins, such as Pol alpha-primase [1-4].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	DNA polymerase alpha-binding protein	protein-containing complex binding chromatin binding binding identical protein binding protein binding	cellular process cell cycle mitotic cell cycle protein-containing complex organization protein-DNA complex assembly protein-DNA complex organization cellular component organization cellular component biogenesis cellular component assembly chromatin organization protein-containing complex assembly chromatin remodeling cellular component organization or biogenesis nucleosome assembly cellular process cell cycle mitotic cell cycle protein-containing complex organization protein-DNA complex assembly protein-DNA complex organization cellular component organization cellular component biogenesis cellular component assembly chromatin organization protein-containing complex assembly chromatin remodeling cellular component organization or biogenesis nucleosome assembly nucleosome organization DNA-templated DNA replication DNA replication initiation primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process organic cyclic compound metabolic process DNA replication organic substance metabolic process metabolic process macromolecule metabolic process cellular response to stimulus response to stimulus cellular response to stress DNA damage response response to stress DNA repair organelle organization mitotic sister chromatid cohesion chromosome organization sister chromatid cohesion cell cycle process double-strand break repair DNA recombination double-strand break repair via break-induced replication recombinational repair double-strand break repair via homologous recombination establishment of sister chromatid cohesion	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen nuclear chromosome chromosome intracellular membrane-bounded organelle cellular anatomical entity intracellular organelle lumen intracellular organelle organelle lumen organelle intracellular non-membrane-bounded organelle nuclear lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen nuclear chromosome chromosome intracellular membrane-bounded organelle cellular anatomical entity intracellular organelle lumen intracellular organelle organelle lumen organelle intracellular non-membrane-bounded organelle nuclear lumen non-membrane-bounded organelle replication fork protection complex protein-containing complex nuclear protein-containing complex nuclear replication fork replication fork Cul8-RING ubiquitin ligase complex cullin-RING ubiquitin ligase complex ubiquitin ligase complex catalytic complex transferase complex intracellular protein-containing complex
D, E	Dna2p	ATP-dependent activity, acting on DNA DNA helicase activity catalytic activity, acting on DNA 5'-3' DNA helicase activity catalytic activity, acting on a nucleic acid helicase activity catalytic activity ATP-dependent activity nuclease activity hydrolase activity, acting on ester bonds hydrolase activity 5'-flap endonuclease activity endonuclease activity endodeoxyribonuclease activity, producing 5'-phosphomonoesters ATP-dependent activity, acting on DNA DNA helicase activity catalytic activity, acting on DNA 5'-3' DNA helicase activity catalytic activity, acting on a nucleic acid helicase activity catalytic activity ATP-dependent activity nuclease activity hydrolase activity, acting on ester bonds hydrolase activity 5'-flap endonuclease activity endonuclease activity endodeoxyribonuclease activity, producing 5'-phosphomonoesters DNA nuclease activity DNA endonuclease activity flap endonuclease activity endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters RNA binding binding organic cyclic compound binding nucleic acid binding iron-sulfur cluster binding 4 iron, 4 sulfur cluster binding metal cluster binding small molecule binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding DNA binding single-stranded DNA endodeoxyribonuclease activity pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity, acting on acid anhydrides single-stranded DNA helicase activity cation binding metal ion binding	cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process double-strand break repair DNA double-strand break processing primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process organic cyclic compound metabolic process organic substance metabolic process cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process double-strand break repair DNA double-strand break processing primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process organic cyclic compound metabolic process organic substance metabolic process metabolic process macromolecule metabolic process DNA repair DNA-templated DNA replication lagging strand elongation DNA strand elongation DNA replication DNA strand elongation involved in DNA replication DNA-templated DNA replication maintenance of fidelity replication fork reversal replication fork processing telomere organization chromosome organization telomere maintenance cellular component organization organelle organization cellular component organization or biogenesis sexual reproduction reproductive process meiotic cell cycle process cell cycle meiotic DNA double-strand break processing cell cycle process meiotic cell cycle	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol intracellular organelle site of double-strand break organelle intracellular non-membrane-bounded organelle site of DNA damage chromosome non-membrane-bounded organelle chromosome, telomeric region chromosomal region membrane-bounded organelle intracellular anatomical structure cytoplasm cellular anatomical entity cytosol intracellular organelle site of double-strand break organelle intracellular non-membrane-bounded organelle site of DNA damage chromosome non-membrane-bounded organelle chromosome, telomeric region chromosomal region membrane-bounded organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
A, B, C	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
A, B, C	IPR022100	Minichromosome loss protein Mcl1, middle region	Domain
A, B, C	IPR048591	DNA polymerase alpha-binding protein Ctf4-like, C-terminal domain	Domain
D, E	IPR041677	DNA2/NAM7 helicase, helicase domain	Domain
D, E	IPR026851	DNA replication ATP-dependent helicase/nuclease Dna2/JHS1, DEXXQ-box helicase domain	Domain
D, E	IPR045055	DNA2/NAM7-like helicase	Family
D, E	IPR041679	DNA2/NAM7 helicase-like, C-terminal	Domain
D, E	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
D, E	IPR014808	DNA replication factor Dna2, N-terminal	Domain
D, E	IPR011604	PD-(D/E)XK endonuclease-like domain superfamily	Homologous Superfamily
D, E	IPR047187	Upf1-like, C-terminal helicase domain	Domain

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.