4R8A
Crystal structure of paFAN1 - 5' flap DNA complex
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | KOG2143_1st | e4r8aA1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: KOG2143_1st | ECOD (1.6) |
A | EUF07944 | e4r8aA2 | A: alpha arrays | X: LEM/SAP HeH motif-like | H: LEM/SAP HeH motif | T: LEM/SAP HeH motif | F: EUF07944 | ECOD (1.6) |
A | UNK_F_TYPE | e4r8aA3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: UNK_F_TYPE | ECOD (1.6) |
A | VRR_NUC | e4r8aA4 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Restriction endonuclease-like (From Topology) | T: Restriction endonuclease-like | F: VRR_NUC | ECOD (1.6) |
E [auth F] | KOG2143_1st | e4r8aF4 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: KOG2143_1st | ECOD (1.6) |
E [auth F] | EUF07944 | e4r8aF3 | A: alpha arrays | X: LEM/SAP HeH motif-like | H: LEM/SAP HeH motif | T: LEM/SAP HeH motif | F: EUF07944 | ECOD (1.6) |
E [auth F] | UNK_F_TYPE | e4r8aF2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: UNK_F_TYPE | ECOD (1.6) |
E [auth F] | VRR_NUC | e4r8aF1 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Restriction endonuclease-like (From Topology) | T: Restriction endonuclease-like | F: VRR_NUC | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, E [auth F] | PF08774 | VRR-NUC domain (VRR_NUC) | VRR-NUC domain | This is the VRR-NUC domain, a member of the PD-(D/E)XK nuclease superfamily found in FAN1 and type III restriction modification enzymes [1]. FAN1 is a a structure-selective DNA repair nuclease with 5' flap endonuclease activity, involved in the repai ... | Domain |
A, E [auth F] | PF18081 | Fanconi anemia-associated nuclease SAP domain (FANC_SAP) | Fanconi anemia-associated nuclease SAP domain | This domain is found in Fanconi-anemia-associated nuclease 1 (FAN1) present in Pseudomonas aeruginosa. FAN1 is a nuclease associated with Fanconi anemia (FA), an autosomal recessive genetic disorder caused by defects in FA genes responsible for proce ... | Domain |
A, E [auth F] | PF21315 | FAN1, HTH domain (FAN1_HTH) | FAN1, HTH domain | FAN1 is a DNA structure-specific nuclease involved in the processing of DNA interstrand crosslinks (ICLs). It maintains genomic stability and prevents tissue decline in several organs. This protein possesses preferential endonuclease activity toward ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, E [auth F] | IPR040603 | Fanconi-associated nuclease 1, SAP domain, bacteria | Domain |
A, E [auth F] | IPR049125 | Fanconi-associated nuclease 1-like, winged-helix domain | Domain |
A, E [auth F] | IPR011856 | tRNA endonuclease-like domain superfamily | Homologous Superfamily |
A, E [auth F] | IPR033315 | Fanconi-associated nuclease 1-like | Family |
A, E [auth F] | IPR014883 | VRR-NUC domain | Domain |