Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyDEATH domain8092818 3000069 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyDEATH domain8092819 3000069 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyDEATH domain8092819 3000069 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyDEATH domain8092818 3000069 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyDEATH domain8092818 3000069 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyDEATH domain8092819 3000069 SCOP2B (2022-06-29)
ESCOP2 FamilyCARD-like8046076 4000308 SCOP2 (2022-06-29)
ESCOP2 FamilyCARD-like8092817 4000308 SCOP2 (2022-06-29)
ESCOP2 SuperfamilyDEATH domain8092818 3000069 SCOP2 (2022-06-29)
ESCOP2 SuperfamilyDEATH domain8092819 3000069 SCOP2 (2022-06-29)
FSCOP2B SuperfamilyDEATH domain8092819 3000069 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyDEATH domain8092818 3000069 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyDEATH domain8092819 3000069 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyDEATH domain8092818 3000069 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyDEATH domain8092818 3000069 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyDEATH domain8092819 3000069 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyDEATH domain8092819 3000069 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyDEATH domain8092818 3000069 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyDEATH domain8092816 3000069 SCOP2B (2022-06-29)
JSCOP2 FamilyCARD-like8046075 4000308 SCOP2 (2022-06-29)
JSCOP2 SuperfamilyDEATH domain8092816 3000069 SCOP2 (2022-06-29)
KSCOP2B SuperfamilyDEATH domain8092816 3000069 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyDEATH domain8092816 3000069 SCOP2B (2022-06-29)
M [auth N]SCOP2B SuperfamilyDEATH domain8092816 3000069 SCOP2B (2022-06-29)
O [auth P]SCOP2B SuperfamilyDEATH domain8092816 3000069 SCOP2B (2022-06-29)
U [auth M]SCOP2B SuperfamilyDEATH domain8092816 3000069 SCOP2B (2022-06-29)
N [auth O]SCOP2B SuperfamilyDEATH domain8092816 3000069 SCOP2B (2022-06-29)
P [auth S]SCOP2B SuperfamilyUbiquitin-like8066187 3000157 SCOP2B (2022-06-29)
Q [auth T]SCOP2B SuperfamilyUbiquitin-like8066187 3000157 SCOP2B (2022-06-29)
R [auth U]SCOP2B SuperfamilyUbiquitin-like8066187 3000157 SCOP2B (2022-06-29)
S [auth W]SCOP2B SuperfamilyUbiquitin-like8066187 3000157 SCOP2B (2022-06-29)
T [auth X]SCOP2B SuperfamilyUbiquitin-like8066187 3000157 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF16739e4p4hA2 A: alpha arraysX: DEATH domainH: DEATH domain (From Topology)T: DEATH domainF: PF16739ECOD (1.6)
CPF16739e4p4hC2 A: alpha arraysX: DEATH domainH: DEATH domain (From Topology)T: DEATH domainF: PF16739ECOD (1.6)
DPF16739e4p4hD2 A: alpha arraysX: DEATH domainH: DEATH domain (From Topology)T: DEATH domainF: PF16739ECOD (1.6)
EPF16739e4p4hE2 A: alpha arraysX: DEATH domainH: DEATH domain (From Topology)T: DEATH domainF: PF16739ECOD (1.6)
FPF16739e4p4hF2 A: alpha arraysX: DEATH domainH: DEATH domain (From Topology)T: DEATH domainF: PF16739ECOD (1.6)
GPF16739e4p4hG2 A: alpha arraysX: DEATH domainH: DEATH domain (From Topology)T: DEATH domainF: PF16739ECOD (1.6)
HPF16739e4p4hH2 A: alpha arraysX: DEATH domainH: DEATH domain (From Topology)T: DEATH domainF: PF16739ECOD (1.6)
BPF16739e4p4hB2 A: alpha arraysX: DEATH domainH: DEATH domain (From Topology)T: DEATH domainF: PF16739ECOD (1.6)
IPF16739e4p4hI1 A: alpha arraysX: DEATH domainH: DEATH domain (From Topology)T: DEATH domainF: PF16739ECOD (1.6)
JPF16739e4p4hJ1 A: alpha arraysX: DEATH domainH: DEATH domain (From Topology)T: DEATH domainF: PF16739ECOD (1.6)
KPF16739e4p4hK1 A: alpha arraysX: DEATH domainH: DEATH domain (From Topology)T: DEATH domainF: PF16739ECOD (1.6)
LPF16739e4p4hL1 A: alpha arraysX: DEATH domainH: DEATH domain (From Topology)T: DEATH domainF: PF16739ECOD (1.6)
M [auth N]PF16739e4p4hN1 A: alpha arraysX: DEATH domainH: DEATH domain (From Topology)T: DEATH domainF: PF16739ECOD (1.6)
O [auth P]PF16739e4p4hP1 A: alpha arraysX: DEATH domainH: DEATH domain (From Topology)T: DEATH domainF: PF16739ECOD (1.6)
U [auth M]PF16739e4p4hM1 A: alpha arraysX: DEATH domainH: DEATH domain (From Topology)T: DEATH domainF: PF16739ECOD (1.6)
N [auth O]PF16739e4p4hO1 A: alpha arraysX: DEATH domainH: DEATH domain (From Topology)T: DEATH domainF: PF16739ECOD (1.6)
P [auth S]PF00240e4p4hS1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: PF00240ECOD (1.6)
Q [auth T]PF00240e4p4hT1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: PF00240ECOD (1.6)
R [auth U]PF00240e4p4hU1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: PF00240ECOD (1.6)
S [auth W]PF00240e4p4hW1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: PF00240ECOD (1.6)
T [auth X]PF00240e4p4hX1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: PF00240ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, FasCATH (4.3.0)
C1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, FasCATH (4.3.0)
D1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, FasCATH (4.3.0)
E1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, FasCATH (4.3.0)
F1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, FasCATH (4.3.0)
G1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, FasCATH (4.3.0)
H1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, FasCATH (4.3.0)
B1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, FasCATH (4.3.0)
I1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, FasCATH (4.3.0)
J1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, FasCATH (4.3.0)
K1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, FasCATH (4.3.0)
L1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, FasCATH (4.3.0)
M [auth N]1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, FasCATH (4.3.0)
O [auth P]1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, FasCATH (4.3.0)
U [auth M]1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, FasCATH (4.3.0)
N [auth O]1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, FasCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF16739Caspase recruitment domain (CARD_2)Caspase recruitment domainIn the probable ATP-dependent RNA helicase DDX58 this CARD domain is found near the N-terminus and interacts with the C-terminal domain [1].Domain
PF16739Caspase recruitment domain (CARD_2)Caspase recruitment domainIn the probable ATP-dependent RNA helicase DDX58 this CARD domain is found near the N-terminus and interacts with the C-terminal domain [1].Domain
P [auth S],
Q [auth T],
R [auth U],
S [auth W],
T [auth X]
PF00240Ubiquitin family (ubiquitin)Ubiquitin familyThis family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ...This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites [5].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
Probable ATP-dependent RNA helicase DDX58
Mitochondrial antiviral-signaling protein
P [auth S],
Q [auth T],
R [auth U],
S [auth W],
T [auth X]
Ubiquitin-60S ribosomal protein L40

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR021673RIG-I-like receptor, C-terminal regulatory domainDomain
A, B, C, D, E
IPR042145RIG-I, CARD domain repeat 2Domain
A, B, C, D, E
IPR011545DEAD/DEAH box helicase domainDomain
A, B, C, D, E
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
A, B, C, D, E
IPR038557RIG-I-like receptor, C-terminal domain superfamilyHomologous Superfamily
A, B, C, D, E
IPR001650Helicase, C-terminal domain-likeDomain
A, B, C, D, E
IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
A, B, C, D, E
IPR041204RIG-I-like receptor, C-terminalDomain
A, B, C, D, E
IPR031964Caspase recruitment domainDomain
A, B, C, D, E
IPR011029Death-like domain superfamilyHomologous Superfamily
IPR031964Caspase recruitment domainDomain
IPR011029Death-like domain superfamilyHomologous Superfamily
IPR042144IPS1, CARD domainDomain
P [auth S],
Q [auth T],
R [auth U],
S [auth W],
T [auth X]
IPR019954Ubiquitin conserved siteConserved Site
P [auth S],
Q [auth T],
R [auth U],
S [auth W],
T [auth X]
IPR038587Large ribosomal subunit protein eL40 superfamilyHomologous Superfamily
P [auth S],
Q [auth T],
R [auth U],
S [auth W],
T [auth X]
IPR000626Ubiquitin-like domainDomain
P [auth S],
Q [auth T],
R [auth U],
S [auth W],
T [auth X]
IPR019956Ubiquitin domainDomain
P [auth S],
Q [auth T],
R [auth U],
S [auth W],
T [auth X]
IPR001975Large ribosomal subunit protein eL40 domainDomain
P [auth S],
Q [auth T],
R [auth U],
S [auth W],
T [auth X]
IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation