4NEE

crystal structure of AP-2 alpha/simga2 complex bound to HIV-1 Nef


Domain Annotation: SCOP Classification SCOP Database (version: 2.0) Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpecies
Ad4need_ Alpha and beta proteins (a+b) Profilin-like SNARE-like Clathrin coat assembly domain Sigma2 adaptin (clathrin coat assembly protein AP17) brown rat,rat,rats (Rattus norvegicus ) [TaxId: 10116 ]
Bd4neel_ Alpha and beta proteins (a+b) Profilin-like SNARE-like Clathrin coat assembly domain Sigma2 adaptin (clathrin coat assembly protein AP17) brown rat,rat,rats (Rattus norvegicus ) [TaxId: 10116 ]
Cd4neef_ Alpha and beta proteins (a+b) Profilin-like SNARE-like Clathrin coat assembly domain Sigma2 adaptin (clathrin coat assembly protein AP17) brown rat,rat,rats (Rattus norvegicus ) [TaxId: 10116 ]
Dd4neei_ Alpha and beta proteins (a+b) Profilin-like SNARE-like Clathrin coat assembly domain Sigma2 adaptin (clathrin coat assembly protein AP17) brown rat,rat,rats (Rattus norvegicus ) [TaxId: 10116 ]
Id4neee1 Alpha and beta proteins (a+b) Regulatory factor Nef Regulatory factor Nef automated matches automated matches (Human immunodeficiency virus 1 ) [TaxId: 11676 ]
Id4neee2 Artifacts Tags Tags Tags N-terminal Tags (Human immunodeficiency virus 1 ) [TaxId: 11676 ]
Jd4neeh1 Alpha and beta proteins (a+b) Regulatory factor Nef Regulatory factor Nef automated matches automated matches (Human immunodeficiency virus 1 ) [TaxId: 11676 ]
Jd4neeh2 Artifacts Tags Tags Tags N-terminal Tags (Human immunodeficiency virus 1 ) [TaxId: 11676 ]
Kd4neek1 Alpha and beta proteins (a+b) Regulatory factor Nef Regulatory factor Nef automated matches automated matches (Human immunodeficiency virus 1 ) [TaxId: 11676 ]
Kd4neek2 Artifacts Tags Tags Tags N-terminal Tags (Human immunodeficiency virus 1 ) [TaxId: 11676 ]
Ld4neec1 Alpha and beta proteins (a+b) Regulatory factor Nef Regulatory factor Nef automated matches automated matches (Human immunodeficiency virus 1 ) [TaxId: 11676 ]
Ld4neec2 Artifacts Tags Tags Tags N-terminal Tags (Human immunodeficiency virus 1 ) [TaxId: 11676 ]
ChainDomainClassArchitectureTopologyHomology
A3.30.450.60 Alpha Beta 2-Layer Sandwich Beta-Lactamase
B3.30.450.60 Alpha Beta 2-Layer Sandwich Beta-Lactamase
C3.30.450.60 Alpha Beta 2-Layer Sandwich Beta-Lactamase
D3.30.450.60 Alpha Beta 2-Layer Sandwich Beta-Lactamase
E1.25.10.10 Mainly Alpha Alpha Horseshoe Leucine-rich Repeat Variant Leucine-rich Repeat Variant
F1.25.10.10 Mainly Alpha Alpha Horseshoe Leucine-rich Repeat Variant Leucine-rich Repeat Variant
G1.25.10.10 Mainly Alpha Alpha Horseshoe Leucine-rich Repeat Variant Leucine-rich Repeat Variant
H1.25.10.10 Mainly Alpha Alpha Horseshoe Leucine-rich Repeat Variant Leucine-rich Repeat Variant
I3.30.62.10 Alpha Beta 2-Layer Sandwich Nef Regulatory Factor Nef Regulatory Factor
J3.30.62.10 Alpha Beta 2-Layer Sandwich Nef Regulatory Factor Nef Regulatory Factor
K3.30.62.10 Alpha Beta 2-Layer Sandwich Nef Regulatory Factor Nef Regulatory Factor
L3.30.62.10 Alpha Beta 2-Layer Sandwich Nef Regulatory Factor Nef Regulatory Factor

Protein Family Annotation Pfam Database Homepage

ChainsAccessionIdentifierDescriptionCommentsSource
A, B, C, DPF01217Clathrin adaptor complex small chain (Clat_adaptor_s)Clathrin adaptor complex small chain- Domain
E, F, G, HPF01602Adaptin N terminal region (Adaptin_N)Adaptin N terminal region- Family
E, F, G, HPF02296Alpha adaptin AP2, C-terminal domain (Alpha_adaptin_C)Alpha adaptin AP2, C-terminal domain- Family
E, F, G, HPF02883Adaptin C-terminal domain (Alpha_adaptinC2)Adaptin C-terminal domainAlpha adaptin is a heterotetramer which regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This ig-fold domain is found in alpha, beta and ...Alpha adaptin is a heterotetramer which regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This ig-fold domain is found in alpha, beta and gamma adaptins.
Domain
I, J, K, LPF00469Negative factor, (F-Protein) or Nef (F-protein)Negative factor, (F-Protein) or Nef- Family

Gene Product Annotation Gene Product Annotation

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
D, F, I, LAP-2 complex subunit sigma
A, B, G, JAP-2 complex subunit alpha-2
C, E, H, KProtein Nef