4L6E

Crystal Structure of the RanBD1 fourth domain of E3 SUMO-protein ligase RanBP2. Northeast Structural Genomics Consortium (NESG) Target HR9193b

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d4l6ea_	All beta proteins	PH domain-like barrel	PH domain-like	automated matches	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Ran_BP1	e4l6eA1	A: beta barrels	X: PH domain-like	H: PH domain-like (From Topology)	T: PH domain-like	F: Ran_BP1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.30.29.30	Mainly Beta	Roll	PH-domain like	Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00638	RanBP1 domain (Ran_BP1)	RanBP1 domain	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	E3 SUMO-protein ligase RanBP2	small GTPase binding protein binding binding enzyme binding GTPase binding RNA binding organic cyclic compound binding nucleic acid binding aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity SUMO transferase activity transferase activity small GTPase binding protein binding binding enzyme binding GTPase binding RNA binding organic cyclic compound binding nucleic acid binding aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity SUMO transferase activity transferase activity catalytic activity SUMO ligase activity ubiquitin-like protein ligase activity protein-containing complex binding cation binding ion binding metal ion binding small molecule binding	monosaccharide metabolic process gluconeogenesis regulation of primary metabolic process organic substance metabolic process regulation of small molecule metabolic process organic substance biosynthetic process small molecule metabolic process regulation of carbohydrate metabolic process regulation of glucose metabolic process regulation of biosynthetic process carbohydrate metabolic process regulation of biological process small molecule biosynthetic process carbohydrate biosynthetic process monosaccharide metabolic process gluconeogenesis regulation of primary metabolic process organic substance metabolic process regulation of small molecule metabolic process organic substance biosynthetic process small molecule metabolic process regulation of carbohydrate metabolic process regulation of glucose metabolic process regulation of biosynthetic process carbohydrate metabolic process regulation of biological process small molecule biosynthetic process carbohydrate biosynthetic process biological regulation hexose metabolic process primary metabolic process monosaccharide biosynthetic process hexose biosynthetic process biosynthetic process regulation of gluconeogenesis metabolic process regulation of carbohydrate biosynthetic process regulation of metabolic process glucose metabolic process localization centrosome localization microtubule organizing center localization cellular process RNA transport nitrogen compound transport transport organic substance transport nucleic acid transport mRNA transport establishment of localization establishment of RNA localization macromolecule localization RNA localization nucleobase-containing compound transport organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process gene expression macromolecule biosynthetic process protein maturation protein folding protein metabolic process macromolecule metabolic process cellular localization nucleocytoplasmic transport nuclear transport establishment of localization in cell intracellular transport peptidyl-lysine modification protein sumoylation macromolecule modification peptidyl-amino acid modification protein modification process post-translational protein modification protein modification by small protein conjugation protein modification by small protein conjugation or removal nuclear export protein localization establishment of protein localization NLS-bearing protein import into nucleus import into nucleus cellular macromolecule localization protein import into nucleus protein localization to nucleus establishment of protein localization to organelle protein transport protein localization to organelle intracellular protein transport response to amine response to organic substance response to stimulus response to organonitrogen compound response to chemical response to nitrogen compound response to amphetamine	membrane cellular anatomical entity membrane-bounded organelle intracellular organelle organelle envelope intracellular anatomical structure organelle nuclear envelope nucleus intracellular membrane-bounded organelle endomembrane system nuclear membrane organelle membrane cytoplasmic periphery of the nuclear pore complex membrane cellular anatomical entity membrane-bounded organelle intracellular organelle organelle envelope intracellular anatomical structure organelle nuclear envelope nucleus intracellular membrane-bounded organelle endomembrane system nuclear membrane organelle membrane cytoplasmic periphery of the nuclear pore complex perinuclear region of cytoplasm cytoplasm cytosol protein-containing complex nuclear protein-containing complex nuclear pore membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen nuclear pore nuclear basket catalytic complex SUMO ligase complex transferase complex inclusion body nuclear inclusion body nuclear outer membrane-endoplasmic reticulum membrane network annulate lamellae nuclear pore cytoplasmic filaments

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR022011	Nup358/RanBP2 E3 ligase domain	Domain
A	IPR029000	Cyclophilin-like domain superfamily	Homologous Superfamily
A	IPR002130	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain	Domain
A	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
A	IPR011993	PH-like domain superfamily	Homologous Superfamily
A	IPR019734	Tetratricopeptide repeat	Repeat
A	IPR020892	Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site	Conserved Site
A	IPR036443	Zinc finger, RanBP2-type superfamily	Homologous Superfamily
A	IPR000156	Ran binding domain	Domain
A	IPR001876	Zinc finger, RanBP2-type	Domain
A	IPR045255	Ran binding protein RanBP1-like	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: P49792	familial acute necrotizing encephalopathy inflammatory myofibroblastic tumor psoriasis acute necrotizing encephalitis breast carcinoma ectodermal dysplasia 10B, hypohidrotic/hair/tooth type, autosomal recessive hereditary spastic paraplegia lung cancer ovarian cancer tuberculosis adrenal cortex carcinoma dermatomyositis ENCEPHALOPATHY, ACUTE, INFECTION-INDUCED, SUSCEPTIBILITY TO, 3 glioblastoma hypohidrotic ectodermal dysplasia familial acute necrotizing encephalopathy inflammatory myofibroblastic tumor psoriasis acute necrotizing encephalitis breast carcinoma ectodermal dysplasia 10B, hypohidrotic/hair/tooth type, autosomal recessive hereditary spastic paraplegia lung cancer ovarian cancer tuberculosis adrenal cortex carcinoma dermatomyositis ENCEPHALOPATHY, ACUTE, INFECTION-INDUCED, SUSCEPTIBILITY TO, 3 glioblastoma hypohidrotic ectodermal dysplasia malignant mesothelioma plasma cell myeloma atypical teratoid rhabdoid tumor ectodermal dysplasia 10A, hypohidrotic/hair/nail type, autosomal dominant myopathy

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.