Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
A [auth B]d4kseb_ Multi-domain proteins (alpha and beta) DNA/RNA polymerases DNA/RNA polymerases Reverse transcriptase HIV-1 reverse transcriptase HIV-1 (HIV-1 M:B_HXB2R ) [TaxId: 11706 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth B]SCOP2B SuperfamilyNucleotide cyclase/DNA polymerase palm domain-like8036908 3001272 SCOP2B (2022-06-29)
A [auth B]SCOP2B SuperfamilyNucleotide cyclase/DNA polymerase palm domain-like8036908 3001272 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth B]PF06817e4kseB1 A: alpha bundlesX: helical bundle domain in reverse transcriptase-like polymerases (From Topology)H: helical bundle domain in reverse transcriptase-like polymerases (From Topology)T: helical bundle domain in reverse transcriptase-like polymerasesF: PF06817ECOD (1.6)
A [auth B]PF00078e4kseB2 A: a+b two layersX: Alpha-beta plaitsH: Adenylyl and guanylyl cyclase catalytic domain-likeT: Adenylyl and guanylyl cyclase catalytic domain-likeF: PF00078ECOD (1.6)
A [auth B]PF06815e4kseB3 A: mixed a+b and a/bX: Ribonuclease H-likeH: RNaseH-like domain in reverse transcriptase (From Topology)T: RNaseH-like domain in reverse transcriptaseF: PF06815ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A [auth B]3.10.10.10 Alpha Beta Roll HIV Type 1 Reverse Transcriptase Chain A, domain 1CATH (4.3.0)
A [auth B]3.30.70.270 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits Reverse transcriptase/Diguanylate cyclase domainCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth B]PF06817Reverse transcriptase thumb domain (RVT_thumb)Reverse transcriptase thumb domainThis domain is known as the thumb domain. It is composed of a four helix bundle [1].Domain
A [auth B]PF06815Reverse transcriptase connection domain (RVT_connect)Reverse transcriptase connection domainThis domain is known as the connection domain. This domain lies between the thumb and palm domains [1].Domain
A [auth B]PF00078Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1)Reverse transcriptase (RNA-dependent DNA polymerase)A reverse transcriptase gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. Reverse transcriptases occur in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs ...A reverse transcriptase gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. Reverse transcriptases occur in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth B]HIV p51 subunit

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth B]IPR036397Ribonuclease H superfamilyHomologous Superfamily
A [auth B]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
A [auth B]IPR001995Peptidase A2A, retrovirus, catalyticDomain
A [auth B]IPR001878Zinc finger, CCHC-typeDomain
A [auth B]IPR008919Retrovirus capsid, N-terminalHomologous Superfamily
A [auth B]IPR012344Matrix protein, lentiviral and alpha-retroviral, N-terminalHomologous Superfamily
A [auth B]IPR036862Integrase, C-terminal domain superfamily, retroviralHomologous Superfamily
A [auth B]IPR018061RetropepsinsDomain
A [auth B]IPR010661Reverse transcriptase thumbDomain
A [auth B]IPR002156Ribonuclease H domainDomain
A [auth B]IPR036875Zinc finger, CCHC-type superfamilyHomologous Superfamily
A [auth B]IPR003308Integrase, N-terminal zinc-binding domainDomain
A [auth B]IPR001584Integrase, catalytic coreDomain
A [auth B]IPR045345Retroviral nucleocapsid Gag protein p24, C-terminal domainDomain
A [auth B]IPR010999Retroviral matrix proteinHomologous Superfamily
A [auth B]IPR021109Aspartic peptidase domain superfamilyHomologous Superfamily
A [auth B]IPR001969Aspartic peptidase, active siteActive Site
A [auth B]IPR012337Ribonuclease H-like superfamilyHomologous Superfamily
A [auth B]IPR017856Integrase-like, N-terminalHomologous Superfamily
A [auth B]IPR000071Immunodeficiency lentiviral matrix, N-terminalDomain
A [auth B]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
A [auth B]IPR001037Integrase, C-terminal, retroviralDomain
A [auth B]IPR034170Retropepsin-like catalytic domainDomain
A [auth B]IPR000477Reverse transcriptase domainDomain
A [auth B]IPR010659Reverse transcriptase connectionDomain
A [auth B]IPR008916Retrovirus capsid, C-terminalHomologous Superfamily