4KRM

Nanobody/VHH domain 7D12 in complex with domain III of the extracellular region of EGFR, pH 3.5


Domain Annotation: SCOP Classification SCOP Database (version: 2.0) Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpecies
Ad4krma1 Alpha and beta proteins (a/b) Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) L domain-like L domain automated matches human (Homo sapiens ) [TaxId: 9606 ]
Ad4krma2 Small proteins Knottins (small inhibitors, toxins, lectins) Growth factor receptor domain automated matches automated matches human (Homo sapiens ) [TaxId: 9606 ]
Ad4krma3 Artifacts Tags Tags Tags N-terminal Tags human (Homo sapiens ) [TaxId: 9606 ]
Cd4krmc1 Alpha and beta proteins (a/b) Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) L domain-like L domain automated matches human (Homo sapiens ) [TaxId: 9606 ]
Cd4krmc2 Small proteins Knottins (small inhibitors, toxins, lectins) Growth factor receptor domain automated matches automated matches human (Homo sapiens ) [TaxId: 9606 ]
Cd4krmc3 Artifacts Tags Tags Tags N-terminal Tags human (Homo sapiens ) [TaxId: 9606 ]
Ed4krme1 Alpha and beta proteins (a/b) Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) L domain-like L domain automated matches human (Homo sapiens ) [TaxId: 9606 ]
Ed4krme2 Small proteins Knottins (small inhibitors, toxins, lectins) Growth factor receptor domain automated matches automated matches human (Homo sapiens ) [TaxId: 9606 ]
Ed4krme3 Artifacts Tags Tags Tags N-terminal Tags human (Homo sapiens ) [TaxId: 9606 ]
Gd4krmg1 Alpha and beta proteins (a/b) Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) L domain-like L domain automated matches human (Homo sapiens ) [TaxId: 9606 ]
Gd4krmg2 Artifacts Tags Tags Tags N-terminal Tags human (Homo sapiens ) [TaxId: 9606 ]
Id4krmi1 Alpha and beta proteins (a/b) Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) L domain-like L domain automated matches human (Homo sapiens ) [TaxId: 9606 ]
Id4krmi2 Small proteins Knottins (small inhibitors, toxins, lectins) Growth factor receptor domain automated matches automated matches human (Homo sapiens ) [TaxId: 9606 ]
Id4krmi3 Artifacts Tags Tags Tags N-terminal Tags human (Homo sapiens ) [TaxId: 9606 ]
Kd4krmk1 Alpha and beta proteins (a/b) Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) L domain-like L domain automated matches human (Homo sapiens ) [TaxId: 9606 ]
Kd4krmk2 Small proteins Knottins (small inhibitors, toxins, lectins) Growth factor receptor domain automated matches automated matches human (Homo sapiens ) [TaxId: 9606 ]
Kd4krmk3 Artifacts Tags Tags Tags N-terminal Tags human (Homo sapiens ) [TaxId: 9606 ]
Bd4krmb_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) automated matches llama (Lama glama ) [TaxId: 9844 ]
Dd4krmd_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) automated matches llama (Lama glama ) [TaxId: 9844 ]
Fd4krmf_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) automated matches llama (Lama glama ) [TaxId: 9844 ]
Hd4krmh_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) automated matches llama (Lama glama ) [TaxId: 9844 ]
Jd4krmj_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) automated matches llama (Lama glama ) [TaxId: 9844 ]
Ld4krml_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) automated matches llama (Lama glama ) [TaxId: 9844 ]
ChainDomainClassArchitectureTopologyHomology
A3.80.20.20 Alpha Beta Alpha-Beta Horseshoe 24 nucleotide stem-loop, u2 snrnp hairpin iv. U2 a' Chain A
C3.80.20.20 Alpha Beta Alpha-Beta Horseshoe 24 nucleotide stem-loop, u2 snrnp hairpin iv. U2 a' Chain A
E3.80.20.20 Alpha Beta Alpha-Beta Horseshoe 24 nucleotide stem-loop, u2 snrnp hairpin iv. U2 a' Chain A
G3.80.20.20 Alpha Beta Alpha-Beta Horseshoe 24 nucleotide stem-loop, u2 snrnp hairpin iv. U2 a' Chain A
I3.80.20.20 Alpha Beta Alpha-Beta Horseshoe 24 nucleotide stem-loop, u2 snrnp hairpin iv. U2 a' Chain A
K3.80.20.20 Alpha Beta Alpha-Beta Horseshoe 24 nucleotide stem-loop, u2 snrnp hairpin iv. U2 a' Chain A
B2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins
D2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins
F2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins
H2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins
J2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins
L2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like Immunoglobulins

Protein Family Annotation Pfam Database Homepage

ChainsAccessionIdentifierDescriptionCommentsSource
A, C, E, G, I, KPF00757Furin-like cysteine rich region (Furin-like)Furin-like cysteine rich region- Domain
A, C, E, G, I, KPF01030Receptor L domain (Recep_L_domain)Receptor L domain- Repeat
A, C, E, G, I, KPF14843Growth factor receptor domain IV (GF_recep_IV)Growth factor receptor domain IVThis is the fourth extracellular domain of receptor tyrosine protein kinases. Interaction between this domain and the furin-like domain (Pfam:PF00757) regulates the binding of ligands to the receptor L domains (Pfam:PF01030) [1].Domain
A, C, E, G, I, KPF07714Protein tyrosine and serine/threonine kinase (PK_Tyr_Ser-Thr)Protein tyrosine and serine/threonine kinaseProtein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosp ...Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity [1]; Serine/threonine-protein kinases, tyrosine-protein kinases, and dual specificity protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins). This entry represents the catalytic domain found in a number of serine/threonine- and tyrosine-protein kinases. It does not include the catalytic domain of dual specificity kinases.
Domain

Gene Product Annotation Gene Product Annotation

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, C, E, G, I, KEpidermal growth factor receptor
B, D, F, H, J, LNanobody/VHH domain 7D12none none none