4KKU

Structure of BesA (Selenomethinone derivative - P212121)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	HlyD-like secretion proteins	8048900	4003003	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	HlyD C-terminal domain-like	8092218	3002572	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Single hybrid motif	8092217	3001880	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	HlyD beta-barrel domain-like	8092216	3002000	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	HlyD C-terminal domain-like	8092218	3002572	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Single hybrid motif	8092217	3001880	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	HlyD beta-barrel domain-like	8092216	3002000	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	HlyD beta-barrel domain-like	8092216	3002000	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	HlyD C-terminal domain-like	8092218	3002572	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Single hybrid motif	8092217	3001880	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	HlyD beta-barrel domain-like	8092216	3002000	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	HlyD beta-barrel domain-like	8092216	3002000	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	HlyD beta-barrel domain-like	8092216	3002000	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	HlyD beta-barrel domain-like	8092216	3002000	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	HlyD C-terminal domain-like	8092218	3002572	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Single hybrid motif	8092217	3001880	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	HlyD_D23_C	e4kkuA2	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: HlyD_D23_C	ECOD (1.6)
A	8a0102	e4kkuA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: 8a0102	ECOD (1.6)
A	Biotin_lipoyl_1	e4kkuA3	A: a+b complex topology	X: alpha/beta-Hammerhead/Barrel-sandwich hybrid	H: alpha/beta-Hammerhead/Barrel-sandwich hybrid	T: Single hybrid motif	F: Biotin_lipoyl_1	ECOD (1.6)
B	HlyD_D23_C	e4kkuB2	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: HlyD_D23_C	ECOD (1.6)
B	8a0102	e4kkuB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: 8a0102	ECOD (1.6)
B	Biotin_lipoyl_1	e4kkuB3	A: a+b complex topology	X: alpha/beta-Hammerhead/Barrel-sandwich hybrid	H: alpha/beta-Hammerhead/Barrel-sandwich hybrid	T: Single hybrid motif	F: Biotin_lipoyl_1	ECOD (1.6)
C	HlyD_D23_C	e4kkuC4	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: HlyD_D23_C	ECOD (1.6)
C	8a0102	e4kkuC3	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: 8a0102	ECOD (1.6)
C	Biotin_lipoyl_1	e4kkuC5	A: a+b complex topology	X: alpha/beta-Hammerhead/Barrel-sandwich hybrid	H: alpha/beta-Hammerhead/Barrel-sandwich hybrid	T: Single hybrid motif	F: Biotin_lipoyl_1	ECOD (1.6)
D	HlyD_D23_C	e4kkuD2	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: HlyD_D23_C	ECOD (1.6)
D	8a0102	e4kkuD1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: 8a0102	ECOD (1.6)
D	Biotin_lipoyl_1	e4kkuD3	A: a+b complex topology	X: alpha/beta-Hammerhead/Barrel-sandwich hybrid	H: alpha/beta-Hammerhead/Barrel-sandwich hybrid	T: Single hybrid motif	F: Biotin_lipoyl_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.40.420.20	Mainly Beta	Beta Barrel	conserved putative lor/sdh protein from methanococcus maripaludis s2 fold		CATH (4.3.0)
A	2.40.30.170	Mainly Beta	Beta Barrel	Elongation Factor Tu (Ef-tu)	domain 3	CATH (4.3.0)
A	2.40.50.100	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain	CATH (4.3.0)
B	2.40.420.20	Mainly Beta	Beta Barrel	conserved putative lor/sdh protein from methanococcus maripaludis s2 fold		CATH (4.3.0)
B	2.40.30.170	Mainly Beta	Beta Barrel	Elongation Factor Tu (Ef-tu)	domain 3	CATH (4.3.0)
B	2.40.50.100	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain	CATH (4.3.0)
C	2.40.420.20	Mainly Beta	Beta Barrel	conserved putative lor/sdh protein from methanococcus maripaludis s2 fold		CATH (4.3.0)
C	2.40.30.170	Mainly Beta	Beta Barrel	Elongation Factor Tu (Ef-tu)	domain 3	CATH (4.3.0)
C	2.40.50.100	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain	CATH (4.3.0)
D	2.40.420.20	Mainly Beta	Beta Barrel	conserved putative lor/sdh protein from methanococcus maripaludis s2 fold		CATH (4.3.0)
D	2.40.30.170	Mainly Beta	Beta Barrel	Elongation Factor Tu (Ef-tu)	domain 3	CATH (4.3.0)
D	2.40.50.100	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)	RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF16576	Barrel-sandwich domain of CusB or HlyD membrane-fusion (HlyD_D23)	Barrel-sandwich domain of CusB or HlyD membrane-fusion	HlyD_D23 is the combined domains 2 and 3 of the membrane-fusion proteins CusB and HlyD, which forms a barrel-sandwich. CusB and HlyD proteins are membrane fusion proteins of the CusCFBA copper efflux system in E.coli and related bacteria. The whole ...	HlyD_D23 is the combined domains 2 and 3 of the membrane-fusion proteins CusB and HlyD, which forms a barrel-sandwich. CusB and HlyD proteins are membrane fusion proteins of the CusCFBA copper efflux system in E.coli and related bacteria. The whole molecule hinges between D2 and D3. Efflux systems of this resistance-nodulation-division group - RND - have been developed to excrete poisonous metal ions, and in E.coli the only one that deals with silver and copper is the CusA transporter. The transporter CusA works in conjunction with a periplasmic component that is a membrane fusion protein, eg CusB, and an outer-membrane channel component CusC in a CusABC complex driven by import of protons.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Membrane fusion protein	transporter activity transmembrane transporter activity	-	membrane cellular anatomical entity

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR006143	RND efflux pump, membrane fusion protein	Family
A, B, C, D	IPR032317	RND efflux pump, membrane fusion protein, barrel-sandwich domain	Domain
A, B, C, D	IPR039562	Membrane fusion protein, biotin-lipoyl like domain	Domain
A, B, C, D	IPR011053	Single hybrid motif	Homologous Superfamily

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.