4ILW

Complex of matrix metalloproteinase-10 catalytic domain (MMP-10cd) with tissue inhibitor of metalloproteinases-2 (TIMP-2)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d4ilwa_	All beta proteins	OB-fold	TIMP-like	Tissue inhibitor of metalloproteinases, TIMP	TIMP-2	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d4ilwb_	All beta proteins	OB-fold	TIMP-like	Tissue inhibitor of metalloproteinases, TIMP	TIMP-2	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C [auth D]	d4ilwd_	Alpha and beta proteins (a+b)	Zincin-like	Metalloproteases ('zincins'), catalytic domain	Matrix metalloproteases, catalytic domain	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D [auth F]	d4ilwf_	Alpha and beta proteins (a+b)	Zincin-like	Metalloproteases ('zincins'), catalytic domain	Matrix metalloproteases, catalytic domain	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	TIMP-like	8041907	3000488	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	TIMP-like	8041907	3000488	SCOP2B (2022-06-29)
C [auth D]	SCOP2B Superfamily	Metalloproteases (zincins) catalytic domain	8039591	3001975	SCOP2B (2022-06-29)
D [auth F]	SCOP2B Superfamily	Metalloproteases (zincins) catalytic domain	8039591	3001975	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	TIMP	e4ilwA1	A: beta barrels	X: OB-fold	H: TIMP-like (From Topology)	T: TIMP-like	F: TIMP	ECOD (1.6)
B	TIMP	e4ilwB1	A: beta barrels	X: OB-fold	H: TIMP-like (From Topology)	T: TIMP-like	F: TIMP	ECOD (1.6)
C [auth D]	Peptidase_M10	e4ilwD1	A: mixed a+b and a/b	X: Zincin-like	H: Metalloproteases (zincins) catalytic domain (From Topology)	T: Metalloproteases (zincins) catalytic domain	F: Peptidase_M10	ECOD (1.6)
D [auth F]	Peptidase_M10	e4ilwF1	A: mixed a+b and a/b	X: Zincin-like	H: Metalloproteases (zincins) catalytic domain (From Topology)	T: Metalloproteases (zincins) catalytic domain	F: Peptidase_M10	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.90.370.10	Alpha Beta	Alpha-Beta Complex	Tissue inhibitor of metalloproteinase-1. Chain B, domain 1	Tissue inhibitor of metalloproteinase-1. Chain B, domain 1	CATH (4.3.0)
A	2.40.50.120	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)		CATH (4.3.0)
B	3.90.370.10	Alpha Beta	Alpha-Beta Complex	Tissue inhibitor of metalloproteinase-1. Chain B, domain 1	Tissue inhibitor of metalloproteinase-1. Chain B, domain 1	CATH (4.3.0)
B	2.40.50.120	Mainly Beta	Beta Barrel	OB fold (Dihydrolipoamide Acetyltransferase, E2P)		CATH (4.3.0)
C [auth D]	3.40.390.10	Alpha Beta	3-Layer(aba) Sandwich	Collagenase (Catalytic Domain)	Collagenase (Catalytic Domain)	CATH (4.3.0)
D [auth F]	3.40.390.10	Alpha Beta	3-Layer(aba) Sandwich	Collagenase (Catalytic Domain)	Collagenase (Catalytic Domain)	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00965	Tissue inhibitor of metalloproteinase (TIMP)	Tissue inhibitor of metalloproteinase	Members of this family are common in extracellular regions of vertebrate species	Domain
C [auth D], D [auth F]	PF00413	Matrixin (Peptidase_M10)	Matrixin	The members of this family are enzymes that cleave peptides. These proteases require zinc for catalysis.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Metalloproteinase inhibitor 2	molecular function inhibitor activity molecular function regulator activity enzyme regulator activity peptidase regulator activity enzyme inhibitor activity peptidase inhibitor activity protein binding binding enzyme binding protease binding cation binding transition metal ion binding zinc ion binding ion binding molecular function inhibitor activity molecular function regulator activity enzyme regulator activity peptidase regulator activity enzyme inhibitor activity peptidase inhibitor activity protein binding binding enzyme binding protease binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding endopeptidase regulator activity metalloendopeptidase inhibitor activity endopeptidase inhibitor activity	negative regulation of hydrolase activity negative regulation of proteolysis regulation of catalytic activity negative regulation of biological process negative regulation of catalytic activity negative regulation of nitrogen compound metabolic process regulation of primary metabolic process regulation of nitrogen compound metabolic process negative regulation of peptidase activity organic substance metabolic process regulation of proteolysis proteolysis nitrogen compound metabolic process protein metabolic process negative regulation of hydrolase activity negative regulation of proteolysis regulation of catalytic activity negative regulation of biological process negative regulation of catalytic activity negative regulation of nitrogen compound metabolic process regulation of primary metabolic process regulation of nitrogen compound metabolic process negative regulation of peptidase activity organic substance metabolic process regulation of proteolysis proteolysis nitrogen compound metabolic process protein metabolic process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process regulation of biological process organonitrogen compound metabolic process regulation of protein metabolic process negative regulation of metabolic process regulation of peptidase activity biological regulation negative regulation of molecular function primary metabolic process regulation of macromolecule metabolic process regulation of molecular function regulation of metallopeptidase activity regulation of hydrolase activity negative regulation of metallopeptidase activity metabolic process macromolecule metabolic process regulation of metabolic process negative regulation of membrane protein ectodomain proteolysis negative regulation of cellular catabolic process catabolic process regulation of cellular process macromolecule catabolic process negative regulation of cellular metabolic process negative regulation of protein catabolic process cellular catabolic process membrane protein proteolysis negative regulation of cellular process membrane protein ectodomain proteolysis organonitrogen compound catabolic process negative regulation of catabolic process regulation of membrane protein ectodomain proteolysis cellular metabolic process regulation of cellular metabolic process regulation of catabolic process protein catabolic process regulation of cellular catabolic process cellular process organic substance catabolic process regulation of protein catabolic process response to organic substance response to stimulus response to chemical response to cytokine response to hormone response to endogenous stimulus	membrane-bounded organelle intracellular anatomical structure tertiary granule lumen membrane-enclosed lumen intracellular vesicle cellular anatomical entity intracellular membrane-bounded organelle endomembrane system intracellular organelle lumen tertiary granule intracellular organelle organelle lumen cytoplasmic vesicle organelle membrane-bounded organelle intracellular anatomical structure tertiary granule lumen membrane-enclosed lumen intracellular vesicle cellular anatomical entity intracellular membrane-bounded organelle endomembrane system intracellular organelle lumen tertiary granule intracellular organelle organelle lumen cytoplasmic vesicle organelle secretory granule secretory vesicle cytoplasm vesicle extracellular region cell periphery extracellular matrix external encapsulating structure collagen-containing extracellular matrix vesicle lumen cytoplasmic vesicle lumen secretory granule lumen specific granule lumen specific granule extracellular space ficolin-1-rich granule ficolin-1-rich granule lumen
C [auth D], D [auth F]	Stromelysin-2	peptidase activity catalytic activity, acting on a protein metalloendopeptidase activity hydrolase activity metallopeptidase activity catalytic activity endopeptidase activity serine hydrolase activity serine-type peptidase activity serine-type endopeptidase activity cation binding transition metal ion binding zinc ion binding ion binding peptidase activity catalytic activity, acting on a protein metalloendopeptidase activity hydrolase activity metallopeptidase activity catalytic activity endopeptidase activity serine hydrolase activity serine-type peptidase activity serine-type endopeptidase activity cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding	collagen catabolic process catabolic process metabolic process collagen metabolic process cellular component organization extracellular matrix organization cellular process cellular component organization or biogenesis extracellular structure organization external encapsulating structure organization cellular component disassembly extracellular matrix disassembly organic substance metabolic process organonitrogen compound metabolic process collagen catabolic process catabolic process metabolic process collagen metabolic process cellular component organization extracellular matrix organization cellular process cellular component organization or biogenesis extracellular structure organization external encapsulating structure organization cellular component disassembly extracellular matrix disassembly organic substance metabolic process organonitrogen compound metabolic process proteolysis nitrogen compound metabolic process primary metabolic process protein metabolic process macromolecule metabolic process	extracellular region cellular anatomical entity cell periphery extracellular matrix external encapsulating structure extracellular space

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR027465	Proteinase inhibitor I35b (TIMP), C-terminal	Homologous Superfamily
A, B	IPR001134	Netrin domain	Domain
A, B	IPR008993	Tissue inhibitor of metalloproteinases-like, OB-fold	Homologous Superfamily
A, B	IPR030490	Tissue inhibitor of metalloproteinase, conserved site	Conserved Site
A, B	IPR001820	Protease inhibitor I35 (TIMP)	Family
C [auth D], D [auth F]	IPR018486	Hemopexin, conserved site	Conserved Site
C [auth D], D [auth F]	IPR021190	Peptidase M10A	Family
C [auth D], D [auth F]	IPR002477	Peptidoglycan binding-like	Domain
C [auth D], D [auth F]	IPR036375	Hemopexin-like domain superfamily	Homologous Superfamily
C [auth D], D [auth F]	IPR006026	Peptidase, metallopeptidase	Domain
C [auth D], D [auth F]	IPR024079	Metallopeptidase, catalytic domain superfamily	Homologous Superfamily
C [auth D], D [auth F]	IPR018487	Hemopexin-like repeats	Repeat
C [auth D], D [auth F]	IPR000585	Hemopexin-like domain	Domain
C [auth D], D [auth F]	IPR021158	Peptidase M10A, cysteine switch, zinc binding site	Binding Site
C [auth D], D [auth F]	IPR036365	PGBD-like superfamily	Homologous Superfamily
C [auth D], D [auth F]	IPR033739	Peptidase M10A, catalytic domain	Domain
C [auth D], D [auth F]	IPR001818	Peptidase M10, metallopeptidase	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: P16035	calcinosis extrahepatic cholestasis Occupational Diseases myocardial infarction pleural disease juvenile dermatomyositis lung cancer malignant glioma medulloblastoma myopathy pancreatic ductal adenocarcinoma atopic eczema pilocytic astrocytoma Becker muscular dystrophy primitive neuroectodermal tumor calcinosis extrahepatic cholestasis Occupational Diseases myocardial infarction pleural disease juvenile dermatomyositis lung cancer malignant glioma medulloblastoma myopathy pancreatic ductal adenocarcinoma atopic eczema pilocytic astrocytoma Becker muscular dystrophy primitive neuroectodermal tumor Duchenne muscular dystrophy ulcerative colitis glioblastoma limb-girdle muscular dystrophy lung carcinoma malignant mesothelioma pancreatic intraductal papillary-mucinous carcinoma atrial fibrillation pituitary cancer breast cancer cancer Sjogren syndrome Emery-Dreifuss muscular dystrophy subependymal giant cell astrocytoma facioscapulohumeral muscular dystrophy invasive ductal breast carcinoma malignant ependymoma malignant pancreatic neoplasm ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia atypical teratoid rhabdoid tumor breast fibroadenoma eosinophilic esophagitis gastric carcinoma
C [auth D], D [auth F]	Pharos: P09238	rheumatoid arthritis asthma Neoplasm Metastasis contact dermatitis peripheral arterial disease sarcoidosis chronic obstructive pulmonary disease cutaneous lupus erythematosus epilepsy head and neck cancer lung benign neoplasm psoriasis ulcerative colitis atypical teratoid rhabdoid tumor cystic fibrosis rheumatoid arthritis asthma Neoplasm Metastasis contact dermatitis peripheral arterial disease sarcoidosis chronic obstructive pulmonary disease cutaneous lupus erythematosus epilepsy head and neck cancer lung benign neoplasm psoriasis ulcerative colitis atypical teratoid rhabdoid tumor cystic fibrosis gastric cancer hereditary diffuse gastric adenocarcinoma non-small cell lung carcinoma bipolar disorder ductal breast carcinoma in situ gastric neoplasm interstitial cystitis malignant mesothelioma

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.