3PMT

Crystal structure of the Tudor domain of human Tudor domain-containing protein 3

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d3pmta_	All beta proteins	SH3-like barrel	Tudor/PWWP/MBT	Tudor domain	Tudor domain-containing protein 3, TDRD3	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Tudor/PWWP/MBT domain-like	8085135	3000404	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	SMN_N	e3pmtA1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: SMN_N	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.30.30.140	Mainly Beta	Roll	SH3 type barrels.		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00567	Tudor domain (TUDOR)	Tudor domain	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Tudor domain-containing protein 3	protein-containing complex binding chromatin binding binding transcription coactivator activity transcription regulator activity transcription coregulator activity protein-macromolecule adaptor activity molecular adaptor activity RNA binding organic cyclic compound binding nucleic acid binding methylated histone binding protein binding modification-dependent protein binding protein-containing complex binding chromatin binding binding transcription coactivator activity transcription regulator activity transcription coregulator activity protein-macromolecule adaptor activity molecular adaptor activity RNA binding organic cyclic compound binding nucleic acid binding methylated histone binding protein binding modification-dependent protein binding histone binding methylation-dependent protein binding	cellular metabolic process chromosome organization cellular nitrogen compound metabolic process primary metabolic process DNA conformation change DNA metabolic process nucleic acid metabolic process cellular component organization nucleobase-containing compound metabolic process DNA topological change organic cyclic compound metabolic process organelle organization organic substance metabolic process heterocycle metabolic process cellular metabolic process chromosome organization cellular nitrogen compound metabolic process primary metabolic process DNA conformation change DNA metabolic process nucleic acid metabolic process cellular component organization nucleobase-containing compound metabolic process DNA topological change organic cyclic compound metabolic process organelle organization organic substance metabolic process heterocycle metabolic process nitrogen compound metabolic process cellular process metabolic process cellular component organization or biogenesis macromolecule metabolic process cellular aromatic compound metabolic process protein-DNA complex organization protein-containing complex organization chromatin organization	protein-containing complex DNA topoisomerase III-beta-TDRD3 complex membrane-bounded organelle intracellular organelle intracellular anatomical structure Golgi apparatus organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle endomembrane system cytosol nucleus membrane-enclosed lumen protein-containing complex DNA topoisomerase III-beta-TDRD3 complex membrane-bounded organelle intracellular organelle intracellular anatomical structure Golgi apparatus organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle endomembrane system cytosol nucleus membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR002999	Tudor domain	Domain
A	IPR047379	Tudor domain-containing protein 3, Tudor domain	Domain
A	IPR013894	RecQ mediated genome instability protein 1, OB-fold domain	Domain
A	IPR042470	RecQ mediated genome instability protein, N-terminal OB-fold domain superfamily	Homologous Superfamily
A	IPR041915	Tudor domain-containing protein 3, UBA domain	Domain
A	IPR009060	UBA-like superfamily	Homologous Superfamily
A	IPR015940	Ubiquitin-associated domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q9H7E2	lung cancer ovarian cancer medulloblastoma psoriasis osteosarcoma

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.