3NYY

Crystal structure of a putative glycyl-glycine endopeptidase lytM (RUMGNA_02482) from Ruminococcus gnavus ATCC 29149 at 1.60 A resolution


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AEUF08009e3nyyA1 A: alpha arraysX: N-terminal domain of lytM (From Topology)H: N-terminal domain of lytM (From Topology)T: N-terminal domain of lytMF: EUF08009ECOD (1.6)
APeptidase_M23e3nyyA2 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Duplicated hybrid motifF: Peptidase_M23ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF21640LytM, N-terminal domain (LytM_N)LytM, N-terminal domainThis domain is found at the N-terminal end of the peptidase from the M23 family LytM found in Ruminococcus gnavus and similar proteins predominantly found in firmicutes. This protein is predicted to have glycyl-glycine endopeptidase activity. This do ...This domain is found at the N-terminal end of the peptidase from the M23 family LytM found in Ruminococcus gnavus and similar proteins predominantly found in firmicutes. This protein is predicted to have glycyl-glycine endopeptidase activity. This domain shows an all-alpha structure.
Domain
PF01551Peptidase family M23 (Peptidase_M23)Peptidase family M23- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Putative glycyl-glycine endopeptidase lytM- -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR016047Peptidase M23Domain
IPR048476LytM, N-terminal domainDomain
IPR011055Duplicated hybrid motifHomologous Superfamily