3J0P

Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 1


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
N [auth B]SCOP2B SuperfamilyRibosomal protein L1p/L10e-like8098448 3001911 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
J [auth X]PF04758e3j0pX1 A: extended segmentsX: 40S ribosomal protein S30 (S30e) (From Topology)H: 40S ribosomal protein S30 (S30e) (From Topology)T: 40S ribosomal protein S30 (S30e)F: PF04758ECOD (1.6)
N [auth B]PF00687e3j0pB4 A: a+b two layersX: a+b domain in Ribosomal protein L1 (From Topology)H: a+b domain in Ribosomal protein L1 (From Topology)T: a+b domain in Ribosomal protein L1F: PF00687ECOD (1.6)
N [auth B]PF00687e3j0pB3 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Rossmann-like domain in Ribosomal protein L1 (From Topology)T: Rossmann-like domain in Ribosomal protein L1F: PF00687ECOD (1.6)
H [auth S]PF00203e3j0pS1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: PF00203ECOD (1.6)
I [auth L]PF00164e3j0pL1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00164ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
N [auth B]PF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10.Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth a]40S ribosomal RNA fragment---
J [auth X]Ribosomal protein S30---
K [auth 2]60S ribosomal RNA fragment---
L [auth 3]60S ribosomal RNA fragment---
M [auth 7]60S ribosomal RNA fragment---
N [auth B]Ribosomal protein L10a
O [auth Y]tRNA---
P [auth y]mRNA fragment---
Q [auth W]tRNA---
R [auth w]mRNA fragment---
B [auth c]40S ribosomal RNA fragment---
C [auth d]40S ribosomal RNA fragment---
D [auth g]40S ribosomal RNA fragment---
E [auth G]40S ribosomal RNA fragment---
F [auth f]40S ribosomal RNA fragment---
G [auth h]40S ribosomal RNA fragment---
H [auth S]Ribosomal protein S15---
I [auth L]Ribosomal protein S23---