3GKU
Crystal structure of a probable RNA-binding protein from Clostridium symbiosum ATCC 14940
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | R3H | e3gkuA3 | A: a+b two layers | X: R3H domain-like | H: R3H domain (From Topology) | T: R3H domain | F: R3H | ECOD (1.6) |
A | KH_4 | e3gkuA2 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: KH_4 | ECOD (1.6) |
A | Jag_N | e3gkuA1 | A: a+b two layers | X: Dodecin subunit-like | H: Probable RNA-binding protein N-terminal domain (From Topology) | T: Probable RNA-binding protein N-terminal domain | F: Jag_N | ECOD (1.6) |
B | R3H | e3gkuB8 | A: a+b two layers | X: R3H domain-like | H: R3H domain (From Topology) | T: R3H domain | F: R3H | ECOD (1.6) |
B | KH_4 | e3gkuB7 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: KH_4 | ECOD (1.6) |
B | Jag_N | e3gkuB9 | A: a+b two layers | X: Dodecin subunit-like | H: Probable RNA-binding protein N-terminal domain (From Topology) | T: Probable RNA-binding protein N-terminal domain | F: Jag_N | ECOD (1.6) |
C | KH_4 | e3gkuC2 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: KH_4 | ECOD (1.6) |
C | Jag_N | e3gkuC1 | A: a+b two layers | X: Dodecin subunit-like | H: Probable RNA-binding protein N-terminal domain (From Topology) | T: Probable RNA-binding protein N-terminal domain | F: Jag_N | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.30.80 | Alpha Beta | 2-Layer Sandwich | Defensin A-like | probable RNA-binding protein from clostridium symbiosum atcc 14940 | CATH (4.3.0) |
A | 3.30.300.20 | Alpha Beta | 2-Layer Sandwich | GMP Synthetase | Chain A, domain 3 | CATH (4.3.0) |
A | 3.30.1370.50 | Alpha Beta | 2-Layer Sandwich | Ribosomal Protein S8 | Chain: A, domain 1 | CATH (4.3.0) |
B | 3.30.30.80 | Alpha Beta | 2-Layer Sandwich | Defensin A-like | probable RNA-binding protein from clostridium symbiosum atcc 14940 | CATH (4.3.0) |
B | 3.30.300.20 | Alpha Beta | 2-Layer Sandwich | GMP Synthetase | Chain A, domain 3 | CATH (4.3.0) |
B | 3.30.1370.50 | Alpha Beta | 2-Layer Sandwich | Ribosomal Protein S8 | Chain: A, domain 1 | CATH (4.3.0) |
C | 3.30.30.80 | Alpha Beta | 2-Layer Sandwich | Defensin A-like | probable RNA-binding protein from clostridium symbiosum atcc 14940 | CATH (4.3.0) |
C | 3.30.300.20 | Alpha Beta | 2-Layer Sandwich | GMP Synthetase | Chain A, domain 3 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF13083 | KhpA/KhpB, KH domain (KhpA-B_KH) | KhpA/KhpB, KH domain | The K homology domain is a common RNA-binding motif present in one or multiple copies in both prokaryotic and eukaryotic regulatory proteins. These motifs may act cooperatively to bind RNA in the case of multiple motifs, or independently in the case ... | Domain | |
PF14804 | Jag N-terminus (Jag_N) | Jag N-terminus | This domain is found at the N-terminus of proteins containing Pfam:PF13083 and Pfam:PF01424, including the jag proteins. | Domain | |
PF01424 | R3H domain (R3H) | R3H domain | The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to be binding ssDNA. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR038008 | Jag, KH domain | Domain | |
IPR034079 | RNA-binding protein KhpB, R3H domain | Domain | |
IPR039247 | RNA-binding protein KhpB | Family | |
IPR032782 | RNA-binding protein KhpB, N-terminal | Domain | |
IPR036867 | R3H domain superfamily | Homologous Superfamily | |
IPR001374 | R3H domain | Domain | |
IPR015946 | K homology domain-like, alpha/beta | Homologous Superfamily | |
IPR038247 | Jag, N-terminal domain superfamily | Homologous Superfamily |