2WG3

Crystal structure of the complex between human hedgehog-interacting protein HIP and desert hedgehog without calcium

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2wg3a1	Alpha and beta proteins (a+b)	Hedgehog/DD-peptidase	Hedgehog/DD-peptidase	Hedgehog (development protein), N-terminal signaling domain	automated matches	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d2wg3a2	Artifacts	Tags	Tags	Tags	C-terminal Tags	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d2wg3a3	Artifacts	Tags	Tags	Tags	N-terminal Tags	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d2wg3b_	Alpha and beta proteins (a+b)	Hedgehog/DD-peptidase	Hedgehog/DD-peptidase	Hedgehog (development protein), N-terminal signaling domain	automated matches	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Hedgehog/DD-peptidase	8084199	3001458	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Hedgehog/DD-peptidase	8084199	3001458	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	EGF/Laminin-like	8090933	3000412	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	GSDH-like	8090930	3001635	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	EGF/Laminin-like	8090933	3000412	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	GSDH-like	8090930	3001635	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	HH_signal	e2wg3A1	A: a+b two layers	X: Hedgehog/DD-peptidase (From Topology)	H: Hedgehog/DD-peptidase (From Topology)	T: Hedgehog/DD-peptidase	F: HH_signal	ECOD (1.6)
B	HH_signal	e2wg3B1	A: a+b two layers	X: Hedgehog/DD-peptidase (From Topology)	H: Hedgehog/DD-peptidase (From Topology)	T: Hedgehog/DD-peptidase	F: HH_signal	ECOD (1.6)
C	GSDH	e2wg3C3	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 6-bladed	F: GSDH	ECOD (1.6)
C	EGF_2_like_1	e2wg3C1	A: few secondary structure elements	X: EGF-like	H: EGF-related	T: EGF/Laminin	F: EGF_2_like_1	ECOD (1.6)
D	GSDH	e2wg3D2	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 6-bladed	F: GSDH	ECOD (1.6)
D	EGF_2_like_1	e2wg3D1	A: few secondary structure elements	X: EGF-like	H: EGF-related	T: EGF/Laminin	F: EGF_2_like_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.1380.10	Alpha Beta	2-Layer Sandwich	Muramoyl-pentapeptide Carboxypeptidase	domain 2	CATH (4.3.0)
B	3.30.1380.10	Alpha Beta	2-Layer Sandwich	Muramoyl-pentapeptide Carboxypeptidase	domain 2	CATH (4.3.0)
C	2.10.25.10	Mainly Beta	Ribbon	Laminin	Laminin	CATH (4.3.0)
D	2.10.25.10	Mainly Beta	Ribbon	Laminin	Laminin	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF01085	Hedgehog amino-terminal signalling domain (HH_signal)	Hedgehog amino-terminal signalling domain	For the carboxyl Hint module, see Pfam:PF01079. Hedgehog is a family of secreted signal molecules required for embryonic cell differentiation.	Domain
A, B	PF01079	Hint module (Hint)	Hint module	-	Family
C, D	PF03024	Folate receptor family (Folate_rec)	Folate receptor family	This family includes the folate receptor which binds to folate and reduced folic acid derivatives and mediates delivery of 5-methyltetrahydrofolate to the interior of cells. These proteins are attached to the membrane by a GPI-anchor. The proteins co ...	This family includes the folate receptor which binds to folate and reduced folic acid derivatives and mediates delivery of 5-methyltetrahydrofolate to the interior of cells. These proteins are attached to the membrane by a GPI-anchor. The proteins contain 16 conserved cysteines that form eight disulphide bridges.	Domain
C, D	PF07995	Glucose / Sorbosone dehydrogenase (GSDH)	Glucose / Sorbosone dehydrogenase	-	Repeat
C, D	PF07974	EGF-like domain (EGF_2)	EGF-like domain	This family contains EGF domains found in a variety of extracellular proteins.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	DESERT HEDGEHOG PROTEIN N-PRODUCT	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding peptidase activity catalytic activity, acting on a protein hydrolase activity catalytic activity cholesterol-protein transferase activity transferase activity transition metal ion binding zinc ion binding cation binding ion binding binding calcium ion binding metal ion binding small molecule binding peptidase activity catalytic activity, acting on a protein hydrolase activity catalytic activity cholesterol-protein transferase activity transferase activity transition metal ion binding zinc ion binding patched binding protein binding signaling receptor binding	developmental process cellular developmental process cell differentiation cellular process cell fate specification cell fate commitment organic substance metabolic process organonitrogen compound metabolic process proteolysis self proteolysis nitrogen compound metabolic process metabolic process primary metabolic process protein metabolic process developmental process cellular developmental process cell differentiation cellular process cell fate specification cell fate commitment organic substance metabolic process organonitrogen compound metabolic process proteolysis self proteolysis nitrogen compound metabolic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process multicellular organismal process ossification osteoblast differentiation regulation of biosynthetic process regulation of steroid biosynthetic process regulation of biological process regulation of lipid metabolic process steroid metabolic process regulation of steroid metabolic process biological regulation lipid biosynthetic process regulation of primary metabolic process organic cyclic compound metabolic process biosynthetic process organic cyclic compound biosynthetic process organic substance biosynthetic process regulation of lipid biosynthetic process steroid biosynthetic process regulation of metabolic process lipid metabolic process gonad development reproductive system development reproductive process sex differentiation animal organ development developmental process involved in reproduction male gonad development male sex differentiation multicellular organism development development of primary male sexual characteristics development of primary sexual characteristics anatomical structure development reproductive structure development Leydig cell differentiation system development cellular biosynthetic process cellular metabolic process gene expression macromolecule biosynthetic process protein maturation protein autoprocessing protein processing cellular response to stimulus regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling smoothened signaling pathway cell communication signal transduction response to organic substance response to hormone response to chemical response to endogenous stimulus response to estrogen sex determination male sex determination regulation of cellular metabolic process regulation of macromolecule metabolic process regulation of cellular biosynthetic process regulation of gene expression regulation of macromolecule biosynthetic process positive regulation of cell communication positive regulation of signal transduction positive regulation of biological process regulation of signal transduction positive regulation of response to stimulus positive regulation of smoothened signaling pathway positive regulation of cellular process regulation of smoothened signaling pathway regulation of signaling regulation of response to stimulus regulation of cell communication positive regulation of signaling cell-cell signaling spermatid development spermatid differentiation sexual reproduction spermatogenesis multicellular organismal reproductive process cell development cellular process involved in reproduction in multicellular organism gamete generation male gamete generation germ cell development myelination axon ensheathment ensheathment of neurons nervous system development response to lipid response to estradiol response to oxygen-containing compound response to organic cyclic compound	cell periphery plasma membrane membrane cellular anatomical entity membrane-bounded organelle intracellular anatomical structure organelle subcompartment intracellular membrane-bounded organelle endomembrane system endoplasmic reticulum subcompartment intracellular organelle organelle nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum cell periphery plasma membrane membrane cellular anatomical entity membrane-bounded organelle intracellular anatomical structure organelle subcompartment intracellular membrane-bounded organelle endomembrane system endoplasmic reticulum subcompartment intracellular organelle organelle nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum cytoplasm organelle membrane endoplasmic reticulum membrane Golgi membrane Golgi apparatus bounding membrane of organelle extracellular region extracellular space
C, D	HEDGEHOG-INTERACTING PROTEIN	hedgehog family protein binding protein binding binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	cellular response to stimulus regulation of signaling regulation of biological process regulation of cellular process response to stimulus negative regulation of signaling signaling negative regulation of response to stimulus biological regulation negative regulation of biological process regulation of signal transduction negative regulation of signal transduction negative regulation of cell communication cell communication regulation of response to stimulus cellular response to stimulus regulation of signaling regulation of biological process regulation of cellular process response to stimulus negative regulation of signaling signaling negative regulation of response to stimulus biological regulation negative regulation of biological process regulation of signal transduction negative regulation of signal transduction negative regulation of cell communication cell communication regulation of response to stimulus negative regulation of cellular process regulation of cell communication cellular process signal transduction developmental process neuroblast proliferation multicellular organismal process cell population proliferation cellular developmental process nervous system development generation of neurons neurogenesis multicellular organism development cell differentiation anatomical structure development neural precursor cell proliferation system development response to fibroblast growth factor cellular response to growth factor stimulus cell surface receptor protein tyrosine kinase signaling pathway cellular response to endogenous stimulus enzyme-linked receptor protein signaling pathway cell surface receptor signaling pathway response to endogenous stimulus regulation of cellular response to growth factor stimulus fibroblast growth factor receptor signaling pathway response to growth factor cellular response to fibroblast growth factor stimulus regulation of fibroblast growth factor receptor signaling pathway anatomical structure morphogenesis skeletal system development animal organ development skeletal system morphogenesis animal organ morphogenesis negative regulation of programmed cell death regulation of apoptotic process regulation of programmed cell death cell death negative regulation of apoptotic process apoptotic process programmed cell death dorsal/ventral pattern formation pattern specification process regionalization branching morphogenesis of an epithelial tube respiratory tube development tube morphogenesis lung morphogenesis lung development respiratory system development epithelial tube morphogenesis epithelium development tube development morphogenesis of an epithelium tissue development tissue morphogenesis morphogenesis of a branching structure epithelial tube branching involved in lung morphogenesis morphogenesis of a branching epithelium negative regulation of smoothened signaling pathway regulation of smoothened signaling pathway smoothened signaling pathway	extracellular region cellular anatomical entity cell surface cell periphery plasma membrane membrane intracellular anatomical structure cytoplasm membrane-bounded organelle cilium ciliary membrane plasma membrane bounded cell projection cell projection bounding membrane of organelle extracellular region cellular anatomical entity cell surface cell periphery plasma membrane membrane intracellular anatomical structure cytoplasm membrane-bounded organelle cilium ciliary membrane plasma membrane bounded cell projection cell projection bounding membrane of organelle organelle plasma membrane region organelle membrane cell projection membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR036844	Hint domain superfamily	Homologous Superfamily
A, B	IPR001657	Hedgehog protein	Family
A, B	IPR001767	Hedgehog protein, Hint domain	Domain
A, B	IPR003586	Hint domain C-terminal	Domain
A, B	IPR009045	Hedgehog signalling/DD-peptidase zinc-binding domain superfamily	Homologous Superfamily
A, B	IPR003587	Hint domain N-terminal	Domain
A, B	IPR000320	Hedgehog, N-terminal signalling domain	Domain
C, D	IPR011042	Six-bladed beta-propeller, TolB-like	Homologous Superfamily
C, D	IPR013111	EGF-like domain, extracellular	Domain
C, D	IPR018143	Folate receptor-like	Domain
C, D	IPR012938	Glucose/Sorbosone dehydrogenase	Domain
C, D	IPR011041	Soluble quinoprotein glucose/sorbosone dehydrogenase	Homologous Superfamily
C, D	IPR000742	EGF-like domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: O43323	46,XY complete gonadal dysgenesis 46,XY gonadal dysgenesis-motor and sensory neuropathy syndrome 46,XY sex reversal 7 Charcot-Marie-Tooth disease osteoporosis attention deficit hyperactivity disorder, inattentive type Disorders of Sex Development bipolar disorder gonadal dysgenesis
C, D	Pharos: Q96QV1	colorectal cancer gastrointestinal stromal tumor ovarian cancer Pick disease subependymal giant cell astrocytoma adrenal cortex carcinoma chronic obstructive pulmonary disease cystic fibrosis glioblastoma Liver carcinoma malignant ependymoma non-small cell lung carcinoma pancreatic ductal adenocarcinoma pilocytic astrocytoma astrocytic tumor colorectal cancer gastrointestinal stromal tumor ovarian cancer Pick disease subependymal giant cell astrocytoma adrenal cortex carcinoma chronic obstructive pulmonary disease cystic fibrosis glioblastoma Liver carcinoma malignant ependymoma non-small cell lung carcinoma pancreatic ductal adenocarcinoma pilocytic astrocytoma astrocytic tumor colorectal adenoma endometriosis hepatocellular carcinoma lung adenocarcinoma medulloblastoma oligodendroglioma pancreatic intraductal papillary-mucinous carcinoma progressive supranuclear palsy atypical teratoid rhabdoid tumor interstitial cystitis lung carcinoma non-alcoholic fatty liver disease

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.