2PNL

Crystal structure of VP4 protease from infectious pancreatic necrosis virus (IPNV) in space group P1


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyBirnavirus VP4 protease-like8049477 4006521 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyRibosomal protein S5 domain 2-like8053555 3000100 SCOP2 (2022-06-29)
BSCOP2B SuperfamilyRibosomal protein S5 domain 2-like8053555 3000100 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyRibosomal protein S5 domain 2-like8053555 3000100 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyRibosomal protein S5 domain 2-like8053555 3000100 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyRibosomal protein S5 domain 2-like8053555 3000100 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyRibosomal protein S5 domain 2-like8053555 3000100 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyRibosomal protein S5 domain 2-like8053555 3000100 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyRibosomal protein S5 domain 2-like8053555 3000100 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyRibosomal protein S5 domain 2-like8053555 3000100 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyRibosomal protein S5 domain 2-like8053555 3000100 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF01768e2pnlA3 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF01768ECOD (1.6)
APF01768e2pnlA2 A: a/b three-layered sandwichesX: C-terminal subdomain in Lon-related proteases catalytic domains (From Topology)H: C-terminal subdomain in Lon-related proteases catalytic domains (From Topology)T: C-terminal subdomain in Lon-related proteases catalytic domainsF: PF01768ECOD (1.6)
BPF01768e2pnlB3 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF01768ECOD (1.6)
BPF01768e2pnlB2 A: a/b three-layered sandwichesX: C-terminal subdomain in Lon-related proteases catalytic domains (From Topology)H: C-terminal subdomain in Lon-related proteases catalytic domains (From Topology)T: C-terminal subdomain in Lon-related proteases catalytic domainsF: PF01768ECOD (1.6)
CPF01768e2pnlC3 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF01768ECOD (1.6)
CPF01768e2pnlC2 A: a/b three-layered sandwichesX: C-terminal subdomain in Lon-related proteases catalytic domains (From Topology)H: C-terminal subdomain in Lon-related proteases catalytic domains (From Topology)T: C-terminal subdomain in Lon-related proteases catalytic domainsF: PF01768ECOD (1.6)
DPF01768e2pnlD3 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF01768ECOD (1.6)
DPF01768e2pnlD2 A: a/b three-layered sandwichesX: C-terminal subdomain in Lon-related proteases catalytic domains (From Topology)H: C-terminal subdomain in Lon-related proteases catalytic domains (From Topology)T: C-terminal subdomain in Lon-related proteases catalytic domainsF: PF01768ECOD (1.6)
EPF01768e2pnlE3 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF01768ECOD (1.6)
EPF01768e2pnlE2 A: a/b three-layered sandwichesX: C-terminal subdomain in Lon-related proteases catalytic domains (From Topology)H: C-terminal subdomain in Lon-related proteases catalytic domains (From Topology)T: C-terminal subdomain in Lon-related proteases catalytic domainsF: PF01768ECOD (1.6)
FPF01768e2pnlF3 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF01768ECOD (1.6)
FPF01768e2pnlF2 A: a/b three-layered sandwichesX: C-terminal subdomain in Lon-related proteases catalytic domains (From Topology)H: C-terminal subdomain in Lon-related proteases catalytic domains (From Topology)T: C-terminal subdomain in Lon-related proteases catalytic domainsF: PF01768ECOD (1.6)
GPF01768e2pnlG3 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF01768ECOD (1.6)
GPF01768e2pnlG2 A: a/b three-layered sandwichesX: C-terminal subdomain in Lon-related proteases catalytic domains (From Topology)H: C-terminal subdomain in Lon-related proteases catalytic domains (From Topology)T: C-terminal subdomain in Lon-related proteases catalytic domainsF: PF01768ECOD (1.6)
HPF01768e2pnlH3 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF01768ECOD (1.6)
HPF01768e2pnlH2 A: a/b three-layered sandwichesX: C-terminal subdomain in Lon-related proteases catalytic domains (From Topology)H: C-terminal subdomain in Lon-related proteases catalytic domains (From Topology)T: C-terminal subdomain in Lon-related proteases catalytic domainsF: PF01768ECOD (1.6)
IPF01768e2pnlI3 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF01768ECOD (1.6)
IPF01768e2pnlI2 A: a/b three-layered sandwichesX: C-terminal subdomain in Lon-related proteases catalytic domains (From Topology)H: C-terminal subdomain in Lon-related proteases catalytic domains (From Topology)T: C-terminal subdomain in Lon-related proteases catalytic domainsF: PF01768ECOD (1.6)
JPF01768e2pnlJ3 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF01768ECOD (1.6)
JPF01768e2pnlJ2 A: a/b three-layered sandwichesX: C-terminal subdomain in Lon-related proteases catalytic domains (From Topology)H: C-terminal subdomain in Lon-related proteases catalytic domains (From Topology)T: C-terminal subdomain in Lon-related proteases catalytic domainsF: PF01768ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF01768Birnavirus VP4 protein (Birna_VP4)Birnavirus VP4 protein- Family

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR029053Viral coat protein subunitHomologous Superfamily
A, B, C, D, E
IPR043048Birnavirus VP3, domain 1Homologous Superfamily
A, B, C, D, E
IPR025775Birnavirus VP4 protease domainDomain
A, B, C, D, E
IPR043049Birnavirus VP3, domain 2Homologous Superfamily
A, B, C, D, E
IPR002662Birnavirus VP2 proteinFamily
A, B, C, D, E
IPR002663Birnavirus VP3 proteinFamily