2PIF

Crystal structure of UPF0317 protein PSPTO_5379 from Pseudomonas syringae pv. tomato. NorthEast Structural Genomics target PsR181

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2pifa1	Alpha and beta proteins (a+b)	PSTPO5379-like	PSTPO5379-like	PSTPO5379-like	Uncharacterized protein PSTPO5379	(Pseudomonas syringae pv. tomato str. DC3000 ) [TaxId: 223283 ],	SCOPe (2.08)
B	d2pifb_	Alpha and beta proteins (a+b)	PSTPO5379-like	PSTPO5379-like	PSTPO5379-like	Uncharacterized protein PSTPO5379	(Pseudomonas syringae pv. tomato str. DC3000 ) [TaxId: 223283 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	PSTPO5379-like	8023286	4002639	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	PSTPO5379-like	8035666	3001531	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	PSTPO5379-like	8035666	3001531	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	DUF1445	e2pifA2	A: a+b two layers	X: Alpha-beta plaits	H: Nitrogen repressor-like proteins (From Topology)	T: Nitrogen repressor-like proteins	F: DUF1445	ECOD (1.6)
B	DUF1445	e2pifB2	A: a+b two layers	X: Alpha-beta plaits	H: Nitrogen repressor-like proteins (From Topology)	T: Nitrogen repressor-like proteins	F: DUF1445	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.1640.10	Alpha Beta	3-Layer(aba) Sandwich	PSTPO5379-like	PSTPO5379-like	CATH (4.3.0)
A	3.30.2040.10	Alpha Beta	2-Layer Sandwich	PSTPO5379-like fold	PSTPO5379-like domain	CATH (4.3.0)
B	3.40.1640.10	Alpha Beta	3-Layer(aba) Sandwich	PSTPO5379-like	PSTPO5379-like	CATH (4.3.0)
B	3.30.2040.10	Alpha Beta	2-Layer Sandwich	PSTPO5379-like fold	PSTPO5379-like domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF07286	D-glutamate cyclase (D-Glu_cyclase)	D-glutamate cyclase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	UPF0317 protein PSPTO_5379	lyase activity catalytic activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR016938	Uncharacterised protein family UPF0317	Family
A, B	IPR038021	Putative hydro-lyase	Homologous Superfamily
A, B	IPR009906	D-glutamate cyclase	Family

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.