2NDF

Solution NMR structures of AF9 yeats domain in complex with histon H3 acetylation at K18

Domain Annotation: CATH CATH Database (version 4.2.0) Homepage

Chain	Domain	Class	Architecture	Topology	Homology
A	2.60.40.1970	Mainly Beta	Sandwich	Immunoglobulin-like	YEATS domain

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Identifier	Description	Comments	Source
A	PF17793	ANC1 homology domain (AHD) (AHD)	ANC1 homology domain (AHD)	This entry corresponds to the ANC1 homology domain (AHD) found in AF-9 [1].	Domain
A	PF03366	YEATS family (YEATS)	YEATS family	We have named this family the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit'. This family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity	Domain
B	PF00125	Core histone H2A/H2B/H3/H4 (Histone)	Core histone H2A/H2B/H3/H4	-	Domain

Gene Product Annotation Gene Product Annotation

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Protein AF-9	chromatin binding binding nucleic acid binding DNA binding organic cyclic compound binding heterocyclic compound binding protein binding histone binding lysine-acetylated histone binding modification-dependent protein binding acetylation-dependent protein binding	cellular process stem cell division regulation of biological process regulation of cellular process cell division regulation of cell division biological regulation regulation of stem cell division	intracellular anatomical structure chromosome organelle non-membrane-bounded organelle intracellular organelle intracellular non-membrane-bounded organelle cellular anatomical entity cytoplasm cytosol extracellular region extracellular space vesicle membrane-bounded organelle extracellular organelle extracellular exosome extracellular vesicle nucleus nucleoplasm membrane-enclosed lumen nuclear lumen intracellular membrane-bounded organelle organelle lumen intracellular organelle lumen transcription elongation factor complex protein-containing complex nuclear protein-containing complex
B	Histone H3 peptide	binding protein binding cadherin binding cell adhesion molecule binding nucleic acid binding DNA binding organic cyclic compound binding heterocyclic compound binding protein heterodimerization activity protein dimerization activity	metabolic process negative regulation of metabolic process gene expression regulation of gene expression negative regulation of macromolecule metabolic process negative regulation of gene expression regulation of metabolic process regulation of gene expression, epigenetic macromolecule metabolic process negative regulation of gene expression, epigenetic negative regulation of biological process regulation of biological process regulation of macromolecule metabolic process biological regulation organic substance metabolic process cellular process gene silencing regulation of cellular process regulation of gene silencing posttranscriptional regulation of gene expression posttranscriptional gene silencing gene silencing by RNA post-transcriptional gene silencing by RNA gene silencing by miRNA regulation of posttranscriptional gene silencing regulation of gene silencing by miRNA regulation of gene silencing by RNA	extracellular region extracellular space vesicle organelle membrane-bounded organelle extracellular organelle extracellular exosome cellular anatomical entity extracellular vesicle membrane intracellular anatomical structure nucleus nucleoplasm membrane-enclosed lumen nuclear lumen intracellular organelle intracellular membrane-bounded organelle organelle lumen intracellular organelle lumen protein-containing complex

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B	ALY	Parent Component: LYS RESID: AA0055 PSI-MOD : N6-acetyl-L-lysine MOD:00064

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.