2LTU

Solution Structure of autoinhibitory domain of human AMP-activated protein kinase catalytic subunit

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	UBA_AID_AMPKalpha	e2ltuA1	A: alpha arrays	X: RuvA-C	H: RuvA-C, UBA, CRAL/TRIO-N, HBS1 (From Topology)	T: RuvA-C, UBA, CRAL/TRIO-N, HBS1	F: UBA_AID_AMPKalpha	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.8.10	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF21147	AMP-activated protein kinase, alpha subunit, autoinhibitory domain (AMPK_alpha_AID)	AMP-activated protein kinase, alpha subunit, autoinhibitory domain	This domain is found in the catalytic subunit (alpha) of the enzymatic complex AMP-activated protein kinase (AMPK). This protein is organised into an N-terminal kinase domain (KD, Pfam:PF00069) and a regulatory C-terminus, which contains an autoinhib ...	This domain is found in the catalytic subunit (alpha) of the enzymatic complex AMP-activated protein kinase (AMPK). This protein is organised into an N-terminal kinase domain (KD, Pfam:PF00069) and a regulatory C-terminus, which contains an autoinhibitory domain (AID, this entry). This domain can form a compact domain that stabilizes the KD and binds to CBS-2 of the gamma-subunit [1-7].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	5'-AMP-activated protein kinase catalytic subunit alpha-2	protein serine/threonine kinase activity catalytic activity, acting on a protein kinase activity AMP-activated protein kinase activity protein kinase activity transferase activity catalytic activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups [hydroxymethylglutaryl-CoA reductase (NADPH)] kinase activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding protein serine/threonine kinase activity catalytic activity, acting on a protein kinase activity AMP-activated protein kinase activity protein kinase activity transferase activity catalytic activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups [hydroxymethylglutaryl-CoA reductase (NADPH)] kinase activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding cation binding metal ion binding [acetyl-CoA carboxylase] kinase activity protein serine/threonine/tyrosine kinase activity protein-containing complex binding chromatin binding protein serine kinase activity histone H2B kinase activity histone H2BS36 kinase activity histone modifying activity histone kinase activity	response to stimulus response to activity response to muscle activity regulation of biological process catabolic process regulation of cellular process macroautophagy cellular metabolic process biological regulation autophagy regulation of cellular metabolic process regulation of catabolic process regulation of autophagy cellular catabolic process response to stimulus response to activity response to muscle activity regulation of biological process catabolic process regulation of cellular process macroautophagy cellular metabolic process biological regulation autophagy regulation of cellular metabolic process regulation of catabolic process regulation of autophagy cellular catabolic process regulation of macroautophagy regulation of cellular catabolic process metabolic process cellular process regulation of metabolic process process utilizing autophagic mechanism cellular response to stimulus cellular response to nutrient levels response to nutrient levels cellular response to stress response to stress response to starvation cellular response to glucose starvation cellular response to starvation cellular component organization cellular component disassembly organelle organization organelle disassembly lipid droplet disassembly lipid droplet organization cellular component organization or biogenesis negative regulation of hepatocyte apoptotic process regulation of epithelial cell apoptotic process negative regulation of programmed cell death regulation of apoptotic process negative regulation of biological process regulation of programmed cell death cell death epithelial cell apoptotic process negative regulation of apoptotic process regulation of hepatocyte apoptotic process negative regulation of epithelial cell apoptotic process hepatocyte apoptotic process negative regulation of cellular process apoptotic process programmed cell death response to oxidative stress cellular response to chemical stimulus response to chemical cellular response to oxidative stress cellular response to chemical stress response to organic substance response to ketone response to prostaglandin response to lipid cellular response to endogenous stimulus response to hormone response to prostaglandin E cellular response to organic substance cellular response to ketone cellular response to hormone stimulus response to endogenous stimulus response to alcohol cellular response to prostaglandin stimulus response to oxygen-containing compound cellular response to oxygen-containing compound cellular response to prostaglandin E stimulus cellular response to alcohol cellular response to lipid cellular response to inorganic substance cellular response to metal ion response to inorganic substance response to metal ion cellular response to calcium ion response to calcium ion signaling negative regulation of signaling negative regulation of intracellular signal transduction regulation of signal transduction intracellular signal transduction negative regulation of cell communication cell communication negative regulation of TOR signaling regulation of intracellular signal transduction signal transduction TOR signaling regulation of signaling regulation of TOR signaling negative regulation of response to stimulus negative regulation of signal transduction regulation of response to stimulus regulation of cell communication protein phosphorylation organonitrogen compound metabolic process phosphorylation primary metabolic process organic substance metabolic process macromolecule modification phosphate-containing compound metabolic process protein metabolic process macromolecule metabolic process protein modification process phosphorus metabolic process cellular response to xenobiotic stimulus response to xenobiotic stimulus peptidyl-lysine acetylation regulation of protein modification process peptidyl-lysine modification positive regulation of protein metabolic process positive regulation of biological process protein acylation regulation of primary metabolic process positive regulation of metabolic process positive regulation of protein modification process peptidyl-amino acid modification positive regulation of macromolecule metabolic process positive regulation of peptidyl-lysine acetylation positive regulation of protein acetylation regulation of protein metabolic process regulation of macromolecule metabolic process protein acetylation regulation of protein acetylation regulation of peptidyl-lysine acetylation positive regulation of autophagy positive regulation of cellular metabolic process positive regulation of catabolic process positive regulation of cellular catabolic process positive regulation of cellular process chemical homeostasis homeostatic process glucose homeostasis carbohydrate homeostasis macromolecule deacylation protein deacetylation negative regulation of tubulin deacetylation regulation of protein deacetylation tubulin deacetylation negative regulation of protein modification process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process negative regulation of metabolic process regulation of tubulin deacetylation protein deacylation pyridine nucleotide catabolic process oxoacid metabolic process carbohydrate catabolic process carbohydrate derivative metabolic process organophosphate catabolic process regulation of generation of precursor metabolites and energy nucleoside phosphate catabolic process organic acid metabolic process regulation of ATP metabolic process regulation of purine nucleotide catabolic process regulation of small molecule metabolic process regulation of phosphate metabolic process regulation of nucleotide metabolic process small molecule metabolic process purine ribonucleotide catabolic process nucleoside phosphate metabolic process organonitrogen compound catabolic process pyruvate metabolic process purine nucleoside diphosphate metabolic process purine-containing compound catabolic process regulation of purine nucleotide metabolic process nucleobase-containing compound catabolic process positive regulation of ATP metabolic process nucleoside diphosphate metabolic process regulation of phosphorus metabolic process positive regulation of carbohydrate metabolic process monocarboxylic acid metabolic process pyridine-containing compound catabolic process ribose phosphate metabolic process ATP metabolic process positive regulation of purine nucleotide catabolic process nucleobase-containing small molecule metabolic process purine ribonucleoside triphosphate metabolic process purine nucleotide catabolic process carbohydrate derivative catabolic process positive regulation of glycolytic process organic cyclic compound catabolic process purine-containing compound metabolic process ADP metabolic process purine ribonucleoside diphosphate metabolic process organic substance catabolic process purine ribonucleoside diphosphate catabolic process ribonucleotide catabolic process positive regulation of phosphate metabolic process nucleobase-containing compound metabolic process positive regulation of nucleotide catabolic process glycolytic process pyridine-containing compound metabolic process regulation of nucleobase-containing compound metabolic process pyridine nucleotide metabolic process nicotinamide nucleotide metabolic process regulation of carbohydrate catabolic process positive regulation of nucleobase-containing compound metabolic process positive regulation of phosphorus metabolic process nucleotide metabolic process organic cyclic compound metabolic process purine nucleoside diphosphate catabolic process nucleoside diphosphate catabolic process regulation of nucleotide catabolic process nucleoside triphosphate metabolic process purine ribonucleotide metabolic process positive regulation of nucleotide metabolic process purine nucleotide metabolic process ribonucleotide metabolic process ribonucleoside diphosphate metabolic process ribonucleoside diphosphate catabolic process regulation of carbohydrate metabolic process ribonucleoside triphosphate metabolic process nucleotide catabolic process purine nucleoside triphosphate metabolic process carbohydrate metabolic process ADP catabolic process carboxylic acid metabolic process generation of precursor metabolites and energy regulation of glycolytic process positive regulation of purine nucleotide metabolic process organophosphate metabolic process positive regulation of small molecule metabolic process biosynthetic process organic substance biosynthetic process lipid biosynthetic process lipid metabolic process rhythmic process circadian rhythm regulation of circadian rhythm response to monosaccharide response to carbohydrate cellular response to hexose stimulus intracellular chemical homeostasis cellular response to monosaccharide stimulus cellular response to glucose stimulus intracellular glucose homeostasis response to hexose cellular response to carbohydrate stimulus cellular homeostasis response to glucose regulation of cellular component organization stress granule assembly organelle assembly non-membrane-bounded organelle assembly regulation of cellular component biogenesis regulation of organelle organization cellular component biogenesis cellular component assembly regulation of organelle assembly regulation of stress granule assembly multicellular organismal process multicellular organismal-level homeostasis energy homeostasis organic hydroxy compound metabolic process sterol metabolic process steroid metabolic process cholesterol metabolic process alcohol metabolic process steroid biosynthetic process secondary alcohol biosynthetic process small molecule biosynthetic process cholesterol biosynthetic process secondary alcohol metabolic process sterol biosynthetic process organic hydroxy compound biosynthetic process organic cyclic compound biosynthetic process alcohol biosynthetic process regulation of cytoskeleton organization microtubule cytoskeleton organization regulation of microtubule-based process microtubule-based process regulation of microtubule cytoskeleton organization cytoskeleton organization fatty acid homeostasis lipid homeostasis protein localization localization cellular localization protein localization to organelle cellular macromolecule localization macromolecule localization protein localization to lipid droplet fatty acid metabolic process monocarboxylic acid biosynthetic process cellular biosynthetic process organic acid biosynthetic process fatty acid biosynthetic process carboxylic acid biosynthetic process cellular lipid metabolic process positive regulation of macroautophagy regulation of localization regulation of protein localization regulation of cellular localization positive regulation of protein localization negative regulation of TORC1 signaling regulation of TORC1 signaling TORC1 signaling cell surface receptor signaling pathway Wnt signaling pathway negative regulation of cellular metabolic process regulation of biosynthetic process gene expression macromolecule biosynthetic process negative regulation of cellular biosynthetic process regulation of cellular biosynthetic process regulation of gene expression negative regulation of gene expression negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen cellular anatomical entity intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck nuclear body intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen cellular anatomical entity intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck nuclear body intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen cytoplasm cytosol somatodendritic compartment cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection Golgi apparatus endomembrane system cell body neuronal cell body axon cytoplasmic ribonucleoprotein granule ribonucleoprotein granule intracellular non-membrane-bounded organelle supramolecular complex non-membrane-bounded organelle cytoplasmic stress granule protein kinase complex transferase complex, transferring phosphorus-containing groups protein-containing complex catalytic complex transferase complex intracellular protein-containing complex nucleotide-activated protein kinase complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR000719	Protein kinase domain	Domain
A	IPR028375	KA1 domain/Ssp2, C-terminal	Homologous Superfamily
A	IPR049020	PRKAA1/2, autoinhibitory domain	Domain
A	IPR017441	Protein kinase, ATP binding site	Binding Site
A	IPR039148	5'-AMP-activated protein kinase catalytic subunit alpha-2, C-terminal	Domain
A	IPR032270	AMPK, C-terminal adenylate sensor domain	Domain
A	IPR028783	PRKAA2, UBA-like autoinhibitory domain	Domain
A	IPR011009	Protein kinase-like domain superfamily	Homologous Superfamily
A	IPR008271	Serine/threonine-protein kinase, active site	Active Site

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: P54646	cardiomyopathy Cardiomegaly glucose intolerance malignant glioma gastric adenocarcinoma heart disease interstitial cystitis lung carcinoma oligodendroglioma astrocytic tumor glioblastoma large cell medulloblastoma malignant ependymoma medulloblastoma atypical teratoid rhabdoid tumor cardiomyopathy Cardiomegaly glucose intolerance malignant glioma gastric adenocarcinoma heart disease interstitial cystitis lung carcinoma oligodendroglioma astrocytic tumor glioblastoma large cell medulloblastoma malignant ependymoma medulloblastoma atypical teratoid rhabdoid tumor cerebrovascular disorder lung cancer

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.