2JZ6

Solution structure of 50S ribosomal protein L28 from Thermotoga maritima. Northeast Structural Genomics Consortium target VR97

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2jz6a1	Alpha and beta proteins (a+b)	L28p-like	L28p-like	Ribosomal protein L28	Ribosomal protein L28 (L28p)	(Thermotoga maritima MSB8 ) [TaxId: 243274 ],	SCOPe (2.08)
A	d2jz6a3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Thermotoga maritima MSB8 ) [TaxId: 243274 ],	SCOPe (2.08)
A	d2jz6a2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Thermotoga maritima MSB8 ) [TaxId: 243274 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Ribosomal protein L28	8022374	4003961	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	L28p-like	8034754	3001966	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF00830	e2jz6A1	A: few secondary structure elements	X: Ribosomal protein bL28-related (From Homology)	H: Ribosomal protein bL28-related	T: Ribosomal protein L28	F: PF00830	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.30.170.40	Mainly Beta	Roll	Ribosomal Protein L24e	Chain: T	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00830	Ribosomal L28 family (Ribosomal_L28)	Ribosomal L28 family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	50S ribosomal protein L28	structural molecule activity structural constituent of ribosome	organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process amide biosynthetic process cellular nitrogen compound metabolic process translation gene expression macromolecule biosynthetic process cellular nitrogen compound biosynthetic process organic substance metabolic process peptide biosynthetic process biosynthetic process organic substance biosynthetic process organonitrogen compound metabolic process cellular biosynthetic process cellular metabolic process organonitrogen compound biosynthetic process primary metabolic process amide biosynthetic process cellular nitrogen compound metabolic process translation gene expression macromolecule biosynthetic process cellular nitrogen compound biosynthetic process organic substance metabolic process peptide biosynthetic process biosynthetic process organic substance biosynthetic process nitrogen compound metabolic process metabolic process cellular process protein metabolic process macromolecule metabolic process amide metabolic process peptide metabolic process	protein-containing complex ribonucleoprotein complex intracellular organelle intracellular anatomical structure organelle intracellular non-membrane-bounded organelle ribosome cellular anatomical entity non-membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR001383	Large ribosomal subunit protein bL28, bacterial-type	Family
A	IPR037147	Large ribosomal subunit protein bL28 superfamily	Homologous Superfamily
A	IPR026569	Large ribosomal subunit protein bL28	Family
A	IPR034704	Large ribosomal subunit protein bL28/bL31-like superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.