2GMS

E coli GDP-4-keto-6-deoxy-D-mannose-3-dehydratase with bound hydrated PLP

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad2gmsa1 Alpha and beta proteins (a/b) PLP-dependent transferase-like PLP-dependent transferases automated matches automated matches (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Ad2gmsa2 Artifacts Tags Tags Tags N-terminal Tags (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Bd2gmsb1 Alpha and beta proteins (a/b) PLP-dependent transferase-like PLP-dependent transferases automated matches automated matches (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Bd2gmsb2 Artifacts Tags Tags Tags N-terminal Tags (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ADegT_DnrJ_EryC1_1e2gmsA2 A: a+b two layersX: C-terminal domain in some PLP-dependent transferases (From Topology)H: C-terminal domain in some PLP-dependent transferases (From Topology)T: C-terminal domain in some PLP-dependent transferasesF: DegT_DnrJ_EryC1_1ECOD (1.6)
AAminotran_5_Ne2gmsA1 A: a/b three-layered sandwichesX: PLP-dependent transferases (From Topology)H: PLP-dependent transferases (From Topology)T: PLP-dependent transferasesF: Aminotran_5_NECOD (1.6)
BDegT_DnrJ_EryC1_1e2gmsB2 A: a+b two layersX: C-terminal domain in some PLP-dependent transferases (From Topology)H: C-terminal domain in some PLP-dependent transferases (From Topology)T: C-terminal domain in some PLP-dependent transferasesF: DegT_DnrJ_EryC1_1ECOD (1.6)
BAminotran_5_Ne2gmsB1 A: a/b three-layered sandwichesX: PLP-dependent transferases (From Topology)H: PLP-dependent transferases (From Topology)T: PLP-dependent transferasesF: Aminotran_5_NECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.40.640.10 Alpha Beta 3-Layer(aba) Sandwich Aspartate Aminotransferase domain 2CATH (4.3.0)
A3.90.1150.10 Alpha Beta Alpha-Beta Complex Aspartate Aminotransferase, domain 1 Aspartate Aminotransferase, domain 1CATH (4.3.0)
B3.40.640.10 Alpha Beta 3-Layer(aba) Sandwich Aspartate Aminotransferase domain 2CATH (4.3.0)
B3.90.1150.10 Alpha Beta Alpha-Beta Complex Aspartate Aminotransferase, domain 1 Aspartate Aminotransferase, domain 1CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF01041DegT/DnrJ/EryC1/StrS aminotransferase family (DegT_DnrJ_EryC1)DegT/DnrJ/EryC1/StrS aminotransferase familyThe members of this family are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA Swiss:P72454, StsC Swiss:P77952 and StsS [1]. The aminotransferase activity was demons ...The members of this family are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA Swiss:P72454, StsC Swiss:P77952 and StsS [1]. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase EC:2.6.1.50, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
Putative pyridoxamine 5-phosphate-dependent dehydrase, Wbdk - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR015424Pyridoxal phosphate-dependent transferaseHomologous Superfamily
A, B
IPR000653DegT/DnrJ/EryC1/StrS aminotransferaseFamily
A, B
IPR015421Pyridoxal phosphate-dependent transferase, major domainHomologous Superfamily
A, B
IPR015422Pyridoxal phosphate-dependent transferase, small domainHomologous Superfamily