Annotations: 1PM4

Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1pm4a_	All beta proteins	Superantigen (mitogen) Ypm	Superantigen (mitogen) Ypm	Superantigen (mitogen) Ypm	Superantigen (mitogen) Ypm	(Yersinia pseudotuberculosis ) [TaxId: 633 ],	SCOPe (2.08)
B	d1pm4b_	All beta proteins	Superantigen (mitogen) Ypm	Superantigen (mitogen) Ypm	Superantigen (mitogen) Ypm	Superantigen (mitogen) Ypm	(Yersinia pseudotuberculosis ) [TaxId: 633 ],	SCOPe (2.08)
C	d1pm4c_	All beta proteins	Superantigen (mitogen) Ypm	Superantigen (mitogen) Ypm	Superantigen (mitogen) Ypm	Superantigen (mitogen) Ypm	(Yersinia pseudotuberculosis ) [TaxId: 633 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Superantigen (mitogen) Ypm	8026569	4000827	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Superantigen (mitogen) Ypm	8038948	3001598	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Superantigen (mitogen) Ypm	8038948	3001598	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Superantigen (mitogen) Ypm	8038948	3001598	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF09144	e1pm4A1	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: PF09144	ECOD (1.6)
B	PF09144	e1pm4B1	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: PF09144	ECOD (1.6)
C	PF09144	e1pm4C1	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Galactose-binding domain-like	F: PF09144	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.60.120.510	Mainly Beta	Sandwich	Jelly Rolls	Mitogen Ypm	CATH (4.3.0)
B	2.60.120.510	Mainly Beta	Sandwich	Jelly Rolls	Mitogen Ypm	CATH (4.3.0)
C	2.60.120.510	Mainly Beta	Sandwich	Jelly Rolls	Mitogen Ypm	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C	PF09144	Yersinia pseudo-tuberculosis mitogen (YpM)	Yersinia pseudo-tuberculosis mitogen	Members of this family of Yersinia pseudo-tuberculosis mitogens adopt a sandwich structure consisting of nine strands in two beta sheets, in a jelly-roll topology. As with other super-antigens, they are able to excessively activate T cells by binding ...	Members of this family of Yersinia pseudo-tuberculosis mitogens adopt a sandwich structure consisting of nine strands in two beta sheets, in a jelly-roll topology. As with other super-antigens, they are able to excessively activate T cells by binding to the T cell receptor [1].	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR036475	Mitogen Ypm superfamily	Homologous Superfamily
A, B, C	IPR015227	Mitogen, Yersinia pseudotuberculosis	Family

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.