1NEX

Crystal Structure of ScSkp1-ScCdc4-CPD peptide complex


Domain Annotation: SCOP Classification SCOP Database (version: 2.0) Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpecies
A, C
d1nexa1 All alpha proteins Skp1 dimerisation domain-like Skp1 dimerisation domain-like Skp1 dimerisation domain-like Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ]
A, C
d1nexa2 Alpha and beta proteins (a+b) POZ domain POZ domain BTB/POZ domain Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ]
A, C
d1nexc1 All alpha proteins Skp1 dimerisation domain-like Skp1 dimerisation domain-like Skp1 dimerisation domain-like Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ]
A, C
d1nexc2 Alpha and beta proteins (a+b) POZ domain POZ domain BTB/POZ domain Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ]
B, D
d1nexb1 All alpha proteins F-box domain F-box domain F-box domain Cdc4 F-box and linker domains baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ]
B, D
d1nexb2 All beta proteins 7-bladed beta-propeller WD40 repeat-like WD40-repeat Cdc4 propeller domain baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ]
B, D
d1nexd1 All alpha proteins F-box domain F-box domain F-box domain Cdc4 F-box and linker domains baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ]
B, D
d1nexd2 All beta proteins 7-bladed beta-propeller WD40 repeat-like WD40-repeat Cdc4 propeller domain baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ]
ChainDomainClassArchitectureTopologyHomology
A, C
3.30.710.10 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1 Chain A
A, C
3.30.710.10 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1 Chain A
B, D
1.20.1280.50 Mainly Alpha Up-down Bundle Monooxygenase
B, D
2.130.10.10 Mainly Beta 7 Propeller Methylamine Dehydrogenase Chain H
B, D
1.20.1280.50 Mainly Alpha Up-down Bundle Monooxygenase
B, D
2.130.10.10 Mainly Beta 7 Propeller Methylamine Dehydrogenase Chain H

Protein Family Annotation Pfam Database Homepage

ChainsAccessionIdentifierDescriptionCommentsSource
A, C
PF01466Skp1 family, dimerisation domain (Skp1)Skp1 family, dimerisation domain- Domain
A, C
PF03931Skp1 family, tetramerisation domain (Skp1_POZ)Skp1 family, tetramerisation domain- Domain
B, D
PF00646F-box domain (F-box)F-box domainThis domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; Pfam:PF00560 and Pfam:PF07 ...This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; Pfam:PF00560 and Pfam:PF07723) and the WD repeat (Pfam:PF00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression [1-2].
Domain
B, D
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
B, D
PF16856Cell division control protein 4 dimerisation domain (CDC4_D)Cell division control protein 4 dimerisation domainThis is the dimerisation domain (D domain) of fungal cell division control protein 4 [1].Domain

Gene Product Annotation Gene Product Annotation

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, C
Centromere DNA-binding protein complex CBF3 subunit D
B, D
CDC4 protein
E, F
GLL(TPO)PPQSGnonenonenone

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
A, C
MSE Parent Component: MET

B, D
MSE Parent Component: MET

E, F
TPO Parent Component: THR

RESIDAA0038

PSI-MOD :  O-phospho-L-threonine MOD:00047